Aniseed - Transcript Card

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S686.g06245.02.t

Possible name(s)

RDH13

Gene model

Haaura.CG.MTP2014.S686.g06245

Location

S686 [34,879 / 36,513]

Sequences

Amino acid sequence

Length: 240

>Haaura.CG.MTP2014.S686.g06245.02.p
GATVVMGCRHMGKCEEAAREIRRKTENAGVVCRFLDLASLDTVEEFSENLRKEIPHIDVL
INNAGVMKPRPPRTTPRTSDNFERQFGVNYLGHFLLTNLLLDKLSKSRSARVINLTSDAY
AKGQIDLNDLDKSEMEDDDFKLTELYYQSKLAVVLFTDYLSRYFSTVTEFSHVTANCLNP
GVTKTRIGRHAEAPLYAIGMQLYKPIQTILMKTPAQGAQTSIYLAVASDLKDKSGGYFE*

Nucleotide sequence

Length: 720

>Haaura.CG.MTP2014.S686.g06245.02.t
GGAGCGACAGTTGTAATGGGATGTCGTCATATGGGCAAATGTGAAGAGGCTGCGAGAGAG
ATCCGGAGAAAAACAGAGAACGCCGGTGTGGTTTGCAGATTTCTTGATCTAGCTTCGCTC
GACACAGTTGAGGAGTTCTCTGAAAATTTAAGGAAAGAAATCCCACATATCGATGTTCTT
ATCAATAATGCCGGAGTAATGAAGCCCAGACCACCGCGAACAACACCTCGGACTTCCGAT
AACTTTGAGAGACAATTTGGAGTAAACTACTTAGGTCATTTTCTACTTACGAATTTACTG
TTGGATAAACTCAGCAAATCACGTTCAGCAAGAGTAATCAATCTAACCTCGGATGCTTAC
GCTAAAGGACAGATTGATCTGAATGACTTGGATAAGTCAGAAATGGAGGATGATGATTTT
AAACTCACAGAACTTTATTACCAGAGCAAATTGGCTGTTGTCTTGTTCACTGACTACTTA
TCAAGATACTTCTCTACTGTGACGGAATTTTCTCATGTAACCGCCAACTGCCTCAATCCT
GGGGTTACGAAAACGCGAATAGGAAGACATGCCGAAGCTCCTCTTTATGCTATCGGCATG
CAGCTATATAAGCCTATTCAAACAATTTTGATGAAAACTCCTGCACAAGGGGCCCAAACA
AGTATATATTTAGCAGTGGCCTCAGATTTGAAAGATAAAAGCGGGGGTTACTTTGAGTAA

InterProScan

SUPERFAMILY	NAD(P)-bd_dom_sf (IPR036291) - T[1-230] 1.87E-38
Pfam	SDR_fam (IPR002347) - T[1-122] 7.8E-18
PRINTS	SDR_fam (IPR002347) - T[55-66] 3.1E-6 - T[55-66] 1.0E-8 - T[104-120] 1.0E-8 - T[110-118] 3.1E-6 - T[146-165] 1.0E-8 - T[146-165] 3.1E-6 - T[171-188] 1.0E-8

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RDH13_HUMAN	48.117 %	183	8.87E-57
RDH14_HUMAN	41.107 %	162	1.14E-48
RDH12_HUMAN	39.916 %	134	9.4E-38