- Transcript 'Haaura.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S6939.g11163.04.t
Possible name(s)
CSMD3; SELE; SELP
Gene model
Location
S6939 [2 / 2,688]
Amino acid sequence
Length: 478
>Haaura.CG.MTP2014.S6939.g11163.04.p
ALICWECENARGEKDCRKTGKATQCKFNQDACQVEIRNHEGWGYGPLITKRCKQAHACDN
NFKQNPRPAWNPTQCNPLFPTNSVCRCCCGTDRCNYNSLKCWDTTAECDPQPYAPKFGSV
SCSRGKTVGSTCSFQCNQGYGMVGTSSTVCTDKLAWSNPTPACQPITCPPPHVTPANGEV
VCSDGNNLYSQCRFSCNPGFELNGVDISLCQAGNIGSGYGRWSHPAPTCSRAACPAKPSA
PKHGGIVCTKGTSLGSVCEFVCNPHYRRVGPLKSKCVQMEGGILDWDRPTPTCQPIKCEN
QGKLSHGQMNCSKNNFATSTCKFECLDEDYSLYPPQAVENSCQNNTKWNIPKPCCARPCP
PFALMDLVIVLDSSSSIGGENWITMLDFLKLFLSQYSVASDATNFGIFRYNGEVDTDTQI
LLKDYPDSLESVIDAVGKIPYDGSGTNTGNALEHALKVMFARENGNRPKIMDYVLVIT
Nucleotide sequence
Length: 1,434
>Haaura.CG.MTP2014.S6939.g11163.04.t
GCATTGATCTGTTGGGAGTGTGAAAATGCACGTGGCGAGAAGGACTGCAGAAAAACGGGA
AAAGCTACGCAATGCAAATTTAACCAAGATGCTTGTCAAGTGGAAATAAGGAATCACGAA
GGCTGGGGTTATGGACCACTCATTACAAAGAGATGCAAACAAGCTCATGCCTGCGATAAT
AATTTTAAACAAAACCCAAGACCTGCATGGAACCCCACTCAATGCAATCCCTTGTTCCCG
ACGAATTCTGTTTGCAGATGCTGCTGTGGAACGGACAGATGTAACTACAACTCTCTCAAA
TGCTGGGATACGACTGCCGAGTGTGATCCACAACCTTACGCGCCGAAATTTGGCTCCGTT
TCGTGCTCTAGAGGTAAAACTGTCGGCAGTACTTGCAGCTTTCAGTGCAACCAAGGATAC
GGAATGGTCGGAACATCTTCAACTGTCTGCACTGACAAGCTTGCTTGGAGTAATCCTACA
CCAGCATGTCAACCAATCACCTGTCCTCCTCCTCATGTGACTCCTGCAAACGGTGAAGTC
GTCTGCTCAGATGGAAATAATCTATACAGTCAGTGCAGATTTTCCTGCAATCCTGGCTTC
GAATTAAATGGAGTTGACATATCTCTTTGCCAAGCTGGAAACATTGGTAGCGGTTATGGA
AGATGGTCTCACCCTGCTCCAACTTGCAGTCGTGCTGCTTGTCCAGCAAAGCCAAGCGCC
CCGAAACATGGTGGAATTGTGTGTACAAAAGGAACTTCTCTGGGTTCTGTGTGTGAATTT
GTGTGTAATCCACATTACAGGCGTGTCGGACCCCTCAAGTCGAAGTGCGTTCAGATGGAG
GGTGGAATACTGGACTGGGATAGACCGACTCCAACCTGTCAACCGATCAAGTGCGAAAAC
CAAGGAAAGCTTTCCCATGGTCAAATGAACTGCTCAAAAAACAATTTCGCCACATCAACA
TGCAAATTCGAATGCTTAGATGAAGATTATAGCCTCTACCCACCCCAAGCTGTTGAAAAT
TCCTGTCAAAATAATACCAAATGGAATATTCCAAAACCATGCTGTGCACGACCATGTCCT
CCATTTGCACTGATGGACTTAGTCATCGTCCTTGACTCCTCTTCATCAATTGGTGGTGAA
AACTGGATTACAATGTTAGATTTCTTGAAGTTATTTTTGAGTCAGTACAGTGTTGCATCA
GACGCAACTAACTTCGGAATCTTCCGCTACAATGGAGAAGTAGATACAGATACCCAGATT
CTTCTGAAAGATTACCCGGATTCCCTGGAATCTGTAATTGATGCTGTTGGCAAGATCCCA
TACGATGGGTCAGGAACGAACACCGGTAATGCTCTCGAACACGCTCTGAAGGTTATGTTC
GCTCGGGAAAACGGAAATCGACCCAAAATTATGGATTATGTTTTAGTAATCACT
| ProSiteProfiles |
Sushi_SCR_CCP_dom (IPR000436) - T[106-165] 9.981 - T[166-231] 9.691 - T[232-295] 8.033 - T[296-357] 7.205 |
| SMART |
Sushi_SCR_CCP_dom (IPR000436) - T[108-163] 7.7E-9 - T[168-229] 3.1E-11 - T[234-293] 2.4E-7 - T[298-355] 3.9 |
| CDD |
Sushi_SCR_CCP_dom (IPR000436) - T[110-164] 3.27043E-11 - T[168-229] 3.84904E-10 - T[234-294] 6.8741E-7 - T[298-355] 0.00286475 |
| Pfam |
Sushi_SCR_CCP_dom (IPR000436) - T[110-163] 9.4E-8 - T[168-229] 8.6E-7 - T[237-293] 4.6E-7 |
| SUPERFAMILY |
Sushi/SCR/CCP_sf (IPR035976) - T[110-165] 4.27E-11 - T[166-236] 2.64E-12 - T[237-307] 8.95E-12 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[150-173] 1.6E-30 - T[350-478] 1.6E-30 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[363-478] 3.9E-26 |
| Pfam |
VWF_A (IPR002035) - T[366-478] 5.5E-22 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[366-478] 19.375 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LYAM3_HUMAN | 32.773 % | 105 | 4.89E-24 |
| CSMD3_HUMAN | 29.825 % | 90.5 | 4.69E-19 |
| LYAM2_HUMAN | 28.992 % | 91.7 | 1.2E-19 |