Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'Moocci.CG.ELv1_2.S13...' > 
  2. Transcript 'KH2012:KH.C13.6.v2.A...' > 
  3. Transcript 'KH2012:KH.C5.61.v2.A...' > 
  4. Transcript 'Mooccu.CG.ELv1_2.S66...' > 
  5. Transcript 'Haaura.CG.MTP2014.S6...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S698.g06297.01.t

Possible name(s)

LARP6; LARP7; SSB

Gene model

Haaura.CG.MTP2014.S698.g06297

Location

S698 [29,577 / 32,981]

Sequences

Amino acid sequence

Length: 575

>Haaura.CG.MTP2014.S698.g06297.01.p
MSGRQRQYPRINTNRYYDASCKNRGYYIKTEMPSQGVASFTPNQPFPVQGFNGGQYVMIV
PDNAVFVRHNGMDRHSQQPYTYVQELRPQNHYNNYVPGTQWRAPVQLTDTRLNPNSKEFV
HRKTNFLSQSAPRFSSPGIDSERHISSYSESIEGVSTGLSNKLRNLGLRYESGDSGIAES
SSSSTMWSSDDDVDGSISEEDKRASQQDEKIWGIADDKNYWYSEKRLQPNDSICYAIVRQ
LEFYMSNEYLSKDKYLLRQIRCKKDGYVSIKLMTSFKKMKKLAQTWHVLRSAICRMSKTL
VVSAEGLRIRRKEDLPEELRKPRKLTSILAIRLPEKYNAVDKLTSLFRIFGEIGLVRLLR
PEKLVPVDLRNYATQVPDIGMSLCAVIEFESATDALEAVRVLKNRHRDITQMQNSEEAND
DVEGLPKKETELNEDELEKLRSIQEEQPDLGEMRVALLGPRVRRTLYRQDRNKSTETAST
SSRFTSVESDSTGIMDIGHDTVISKGVVTIGKAQHATEERNKAWRGTNAYQHLQGILKSP
RTVRLDNVIRQPRGAQESGGFQLVRSVGKRNKSV*

Nucleotide sequence

Length: 1,725

>Haaura.CG.MTP2014.S698.g06297.01.t
ATGAGCGGCCGACAAAGGCAATATCCTAGAATCAACACCAATCGATATTACGACGCCTCG
TGCAAAAACAGGGGATATTACATCAAAACAGAGATGCCAAGCCAAGGAGTTGCTTCATTT
ACTCCAAATCAGCCATTTCCTGTCCAAGGTTTCAACGGTGGTCAGTACGTCATGATCGTG
CCCGACAACGCGGTATTCGTGCGTCACAACGGAATGGACAGGCACAGCCAACAGCCGTAT
ACGTACGTACAAGAACTGCGGCCACAGAATCACTACAATAATTACGTTCCTGGCACACAA
TGGAGAGCACCAGTACAATTGACAGATACGAGATTGAACCCCAATTCGAAAGAGTTCGTA
CACAGAAAGACAAATTTTCTGTCACAGTCCGCGCCCAGATTTTCATCACCGGGGATTGAC
AGCGAAAGACATATCAGCTCTTACTCGGAGAGCATCGAAGGTGTATCGACTGGACTGAGC
AACAAATTGCGAAATTTAGGATTAAGGTACGAAAGCGGAGACAGTGGAATCGCGGAATCT
TCATCATCATCCACCATGTGGAGTAGTGACGATGATGTTGACGGTTCAATTTCCGAAGAA
GACAAGAGAGCGTCGCAACAAGATGAGAAGATATGGGGCATCGCAGACGACAAAAATTAC
TGGTACAGTGAAAAAAGACTGCAACCTAACGATTCGATTTGCTACGCAATCGTGAGACAA
TTGGAATTTTACATGTCTAACGAATACCTGAGCAAAGACAAATACTTGTTACGTCAAATT
CGCTGCAAAAAAGACGGTTACGTGAGCATCAAACTGATGACGTCATTTAAAAAGATGAAA
AAGCTAGCGCAGACTTGGCACGTGCTCCGCAGCGCCATATGCCGGATGTCTAAAACTCTG
GTTGTAAGTGCAGAAGGACTTAGGATCAGACGGAAAGAAGATTTGCCGGAAGAGTTAAGG
AAGCCGCGTAAACTAACGTCGATACTGGCAATTCGCCTTCCAGAGAAATATAACGCTGTG
GACAAACTAACGTCCCTCTTCCGGATTTTCGGCGAAATCGGACTGGTGAGGTTATTGCGC
CCAGAAAAATTAGTCCCTGTGGATCTCAGGAATTATGCAACGCAAGTGCCTGACATCGGA
ATGTCTCTCTGTGCCGTTATCGAATTCGAATCAGCAACTGATGCCCTAGAAGCGGTTCGC
GTACTCAAAAACCGACATAGGGACATCACGCAAATGCAAAATAGCGAGGAAGCAAATGAT
GACGTGGAAGGTTTGCCGAAAAAAGAAACCGAATTAAACGAAGACGAACTAGAAAAGCTG
AGGAGTATTCAAGAAGAGCAACCAGATCTGGGCGAAATGAGAGTAGCGTTACTGGGCCCT
CGTGTGCGTAGAACTCTCTACAGGCAAGACCGCAACAAATCTACTGAAACTGCTAGTACT
TCATCAAGATTTACATCAGTAGAAAGCGACAGCACTGGAATTATGGATATTGGACACGAC
ACCGTTATCAGCAAGGGAGTAGTTACAATTGGAAAGGCGCAACACGCAACAGAGGAAAGG
AACAAGGCGTGGAGGGGAACCAATGCGTACCAACATCTACAGGGCATTCTAAAATCGCCA
AGAACCGTGCGACTCGATAACGTGATCAGACAGCCGAGGGGTGCTCAAGAGTCTGGCGGA
TTTCAGCTAGTGAGGAGCGTTGGAAAAAGAAATAAATCTGTTTAA

InterProScan

ProSiteProfiles
La_HTH (IPR006630) - T[227-319] 19.69
SUPERFAMILY
WH_DNA-bd_sf (IPR036390) - T[229-317] 8.25E-18
Gene3D
WH-like_DNA-bd_sf (IPR036388) - T[230-320] 6.5E-22
SMART
La_HTH (IPR006630) - T[231-312] 5.0E-21
Pfam
La_HTH (IPR006630) - T[237-293] 1.9E-17

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LARP6_HUMAN 31.092 % 107 7.92E-25