- Transcript 'Haaura.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S721.g06400.01.t
Possible name(s)
GPSM2; RAPSN; TTC28
Gene model
Location
S721 [29,636 / 34,510]
Amino acid sequence
Length: 465
>Haaura.CG.MTP2014.S721.g06400.01.p
VTFKVDLLSVHCWWLIKMGQINSNKNSVPRDMKYAKIYNDTLRSIMDDGDRTAIKKWEKE
IGRKMKDNKERWYVLGYAIRTFESWGRYRIVMELAVNQIETAQEIKTKSSQTDFKGSESH
VSINTTLAESYLNLARANLSLSEFSKCTDYCSKSMSYIAKCRGANSDMTLRITGEIHLCR
GSAYLRLGCFRKALEDLERSLTLASSQHNAVLESMACCVLGRFYVSLKDYEKATFFPLKA
AEILNENDSTPSYRTMIQIHLAEAYRKVGKLNEAMACSEEAMKCAIETSDRGSQAYCLLC
FADIHRTRKDSQRARPRYESAGALMVEIGDRYGEVKVMVGKAKVDLKSKNYAAALELYEG
ALKIAYSINAKMECLGIIGELAVLQQRLSNLEETRKCTVKYHELLDELDLYCGACMKPIA
EKHEQLEALPCSHVFHLQCVSDLGLINTRACPNCRKMMSKPTFV*
Nucleotide sequence
Length: 1,395
>Haaura.CG.MTP2014.S721.g06400.01.t
GTAACTTTTAAAGTTGATTTGTTATCGGTTCACTGCTGGTGGTTGATTAAGATGGGCCAA
ATAAACTCGAACAAAAACTCAGTACCAAGAGATATGAAATATGCAAAAATATATAACGAC
ACACTTCGAAGTATCATGGACGATGGTGATAGAACGGCCATAAAAAAGTGGGAAAAAGAA
ATCGGAAGAAAAATGAAAGACAACAAAGAAAGATGGTACGTATTGGGATACGCCATACGA
ACTTTTGAAAGCTGGGGACGATACCGAATTGTGATGGAGTTAGCCGTAAATCAAATAGAA
ACGGCGCAAGAGATTAAGACAAAAAGCAGTCAGACTGATTTCAAGGGATCCGAATCGCAC
GTCAGCATTAACACAACTCTCGCGGAATCGTATTTGAACTTGGCTAGAGCCAATCTCTCG
TTATCAGAATTCTCCAAATGTACGGATTACTGCAGCAAAAGTATGAGTTACATTGCTAAA
TGTCGAGGTGCCAACAGTGACATGACATTGAGAATTACTGGAGAGATCCACCTGTGTCGC
GGTAGTGCTTATCTCCGACTCGGATGCTTCAGGAAAGCCCTGGAAGATTTAGAGCGCTCT
TTGACTCTGGCATCAAGTCAACATAACGCCGTTTTGGAATCTATGGCTTGTTGCGTCCTT
GGAAGGTTTTATGTAAGCCTGAAAGATTATGAAAAGGCAACATTTTTCCCACTGAAAGCA
GCGGAGATTCTAAACGAAAACGACAGTACTCCTTCGTACAGAACGATGATTCAAATTCAT
CTAGCAGAAGCGTACAGAAAAGTTGGAAAGCTGAACGAAGCCATGGCGTGTAGTGAAGAG
GCAATGAAGTGTGCTATTGAAACTTCTGACAGGGGATCGCAAGCTTACTGTTTGCTCTGT
TTTGCCGACATTCACCGCACTAGGAAGGATTCCCAACGTGCCCGTCCGCGATACGAATCG
GCTGGCGCGTTAATGGTCGAGATAGGAGATCGATATGGTGAAGTTAAGGTCATGGTTGGG
AAGGCGAAAGTCGATCTGAAAAGCAAAAATTACGCGGCTGCACTTGAATTGTACGAGGGA
GCTTTGAAGATTGCTTACTCGATAAATGCAAAGATGGAGTGTCTCGGTATTATCGGAGAA
CTTGCAGTTTTGCAACAACGTTTGAGTAACTTAGAGGAAACACGCAAGTGCACAGTCAAG
TATCACGAGCTGTTGGATGAGTTGGATTTGTATTGCGGCGCATGTATGAAACCGATCGCA
GAAAAGCACGAACAGCTTGAGGCCTTGCCATGTTCCCACGTTTTCCATTTGCAATGTGTT
TCGGATTTGGGCTTGATAAATACCAGGGCTTGTCCAAATTGTAGAAAAATGATGAGTAAG
CCCACTTTCGTGTGA
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[11-248] 1.0E-14 - T[252-404] 2.1E-16 |
| Pfam |
Rapsyn_myristoylation/link_N (IPR019568) - T[50-106] 6.9E-8 |
| SUPERFAMILY |
TPR-like_helical_dom_sf (IPR011990) - T[122-248] 4.7E-13 - T[220-406] 4.55E-20 |
| SMART |
TPR_repeat (IPR019734) - T[128-161] 8.2 - T[174-207] 0.0027 - T[214-247] 17.0 - T[255-288] 55.0 - T[335-368] 140.0 |
| ProSiteProfiles |
TPR_repeat (IPR019734) - T[174-207] 8.231 - T[214-247] 5.753 - T[255-288] 5.959 - T[335-368] 5.664 |
| ProSiteProfiles |
TPR-contain_dom (IPR013026) - T[174-288] 10.271 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[405-463] 1.4E-8 |
| SMART |
Znf_RING (IPR001841) - T[412-454] 0.0068 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[412-455] 11.206 |
| Pfam |
Znf_RING (IPR001841) - T[412-455] 5.4E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RAPSN_HUMAN | 41.787 % | 300 | 4.69E-98 |