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TRANSCRIPT CARD

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  1. Clone 'cien31603' > 
  2. Transcript 'Haaura.CG.MTP2014.S7...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S78.g01712.01.t

Possible name(s)

LDB3; PDLIM1; PDLIM3

Gene model

Haaura.CG.MTP2014.S78.g01712

Location

S78 [45,822 / 47,682]

Sequences

Amino acid sequence

Length: 314

>Haaura.CG.MTP2014.S78.g01712.01.p
LDCSINLVFTLIMPLPSVQHSITLYGDAPWGFRLSGGKEHDQPLVISRVTPGSLAAKCGI
QPGDVLLAVNERYVYNLSQDECEIIVKQAKGSLHLRLEKNAAKVTETSDGAVIIEGDRSI
YDKTTETQKRMSKYNRSAKPFGAPTNGTKKAEETSKQASGFRSISFQPKSPTGPIGPTTT
LPTSARGDPDGTNTVSCDMSKVKIDSQEPPQSTNSSSRFINTGSYNRKPAPFQPGNISNN
SNVSQENEDLPPPPDFLETPNVETKQSNPQAGVELQPTTTVTKKRVVIGPNSALGLYSQE
NAKISYDAQVEDL*

Nucleotide sequence

Length: 942

>Haaura.CG.MTP2014.S78.g01712.01.t
TTAGACTGTAGCATTAATTTAGTATTTACGTTAATCATGCCGCTACCAAGCGTTCAGCAC
TCCATTACACTGTATGGAGATGCGCCATGGGGTTTTCGGTTATCGGGAGGGAAGGAACAC
GATCAACCTTTAGTGATATCTAGGGTAACACCAGGAAGCCTTGCTGCTAAATGTGGAATT
CAGCCTGGTGATGTGTTACTCGCTGTCAATGAACGATATGTCTATAACCTATCTCAGGAT
GAATGTGAAATTATAGTCAAACAGGCCAAGGGGTCCCTCCATTTAAGATTGGAAAAGAAC
GCTGCTAAAGTGACAGAAACTTCGGACGGAGCGGTCATCATAGAAGGAGACAGGAGTATC
TATGACAAAACAACCGAAACGCAAAAGAGGATGTCCAAATACAACAGGAGCGCCAAGCCC
TTTGGCGCACCTACAAACGGCACCAAAAAGGCAGAAGAAACTTCTAAACAGGCATCGGGC
TTCCGGTCGATATCATTTCAACCAAAATCCCCAACTGGACCGATCGGTCCAACAACAACC
TTACCCACCTCTGCCCGAGGTGACCCAGATGGAACAAACACCGTGTCTTGTGATATGTCT
AAGGTCAAGATAGATAGCCAAGAACCCCCCCAGTCTACAAATAGTAGCTCTAGGTTCATT
AACACGGGAAGCTATAACAGGAAGCCTGCCCCATTCCAACCAGGCAACATATCCAACAAT
TCAAATGTGTCCCAAGAGAATGAAGACCTCCCACCCCCTCCAGATTTCCTTGAAACCCCT
AATGTTGAAACAAAACAATCCAATCCACAAGCAGGCGTGGAACTACAGCCGACAACTACA
GTAACCAAAAAACGAGTCGTTATCGGTCCTAACTCCGCACTCGGATTGTATTCTCAAGAA
AACGCTAAAATCAGCTATGATGCACAAGTGGAAGATCTGTGA

InterProScan

SUPERFAMILY
PDZ_sf (IPR036034) - T[18-101] 9.33E-20
Pfam
PDZ (IPR001478) - T[25-97] 1.8E-15
ProSiteProfiles
PDZ (IPR001478) - T[26-101] 15.22
SMART
PDZ (IPR001478) - T[28-101] 8.2E-18

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
PDLI1_HUMAN 40.157 % 78.6 1.71E-16