- Transcript 'Phmamm.CG.MTP2014.S3...' >
- Transcript 'Haaura.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S794.g06693.01.t
Possible name(s)
SLIT1; SLIT2; SLIT3
Gene model
Location
S794 [9,437 / 32,441]
Amino acid sequence
Length: 1,473
>Haaura.CG.MTP2014.S794.g06693.01.p
SDLAFNKIAIIQKKTLRGPTVLRTLQLNNNEITCLHDSSLRPVRTLEFLTLDNNKLSTLS
PMSFLHMSKLRTFRFNGNPIHCDCHLAWMADWLRARPSAGLYTQCTEPTALRGMEIKHLE
RSEFVCNVLTSRSRPTCELDSYCPSVCTCDNGIVDCRDKGLTSLPASLPTDVTEIRLERN
MIKVLPSRAFAGYKKLRRIDLSNNMITDVSKDAFQGLKQLNSLIMYGNKITDLHKGTFDG
LVNLQLLLLNANKIMCLRHDSFDSLTSLKLLSLYDNKIQSISKGTFKSLKSVQTLHLAQN
PFICDCNLRWLADYLQENPVETSGARCAAPRKLSNKKIAQIRSRKFKCDADNGFPPPLAG
ECTPESECPDRCKCDGTIVDCSSQELTGIPDNIPPYVTDLILSFNNIDTLVRVDVFKKMT
NLKKIDLSNNKLTKIEKGAFNGASSVLELWINDNELKELKGEMFSGLDNLKTLMARNNRL
SCINNETFSGLSSLSHLSLYGNKISSIVEGAFDSLSSLALLNLLSNPLNCNCHMAWLSVW
LRQGTFSSGNPRCSQPSFLHGFPVADINPQDFRCTTQELSDPPTCKPEVKCPQHCSCEGN
IVRCINSGLTSFPVDDIPEDVTELYLNLNKIRMIPPEIKKFTKLVKLDLSNNQIATLQDY
IFSNFTRLSTLLLAYNKLRCIPPKGFVGLRNLRILSLHSNEISTVADGTFDDLVSLSHTG
FGSNPWYCDCNLAWFNEWINEDYLEPGIAQCSGPPPVAGMVLLTTPISKFVCAGPLSLPI
ASKCDPCLSTPCLHNGTCRFHPMDYYQCICPPGFKGKHCEMPVNACNLKPCLNGASCRGR
DEISYTCTCPAGFSGMNCEQNINDCLPSPCRAENATCIDGVNSYKCRCPPGWSGEYCDIE
VEDPCISETCLNGGECVTVFGSESKISYRCDCKPGFRGQNCSEVFDPCLNHKCENDGRCV
WDDTSSSGYRCECPPRTRGQYCEFRHGETTLIQQDDPCHNHDCKNGAQCFVEAGGSSDFT
CKCLPGYAGVKCEILSGVGIRRNGSFIQLPTTLDGMEEIHINLEISTKEMNGVIMYAGNS
AQHLALELFTGYVRLSCNGINSYSSAVINDEEFHQIEVDIKASDITLTVDGVQTHGAPSV
RLISITSYLFLGGMPADVLIGARQSWHIRNTTSFIGCIRNVIVGGKPVNFFTARQGEHDD
LFSQDVGIKPGCSADGEASSCYKCLHGDCIYSEESGFTCSCYRGYTGPACDITDEPQTTP
CSNNQCHHGSCRVDSSSSNSYICDCDAGYSGSICDVRDYCAGVDCGQHGTCVTAASGYIC
KCKRGYTGRHCERRIRRCKGTKTRQFVQITIPRPSAPGLSSSSSSMMCKSSRKMSNLVCD
GSNCSRRRKSAARRRSRSSQATLPGSFSFSDQEEPVATCCVPLRQKTKSVELVCDDGSRI
MQEVTKVQSCGCQTLNASPLERMYLKNVLPRV*
Nucleotide sequence
Length: 4,431
>Haaura.CG.MTP2014.S794.g06693.01.t
AGCGATCTGGCGTTCAACAAGATTGCAATCATTCAAAAGAAAACTCTTCGAGGTCCGACT
GTTCTCCGCACACTGCAACTGAACAACAATGAGATCACGTGTCTTCACGATTCTAGTTTA
CGACCAGTCAGAACTCTGGAATTTTTGACGTTGGACAACAACAAACTTTCAACCCTGTCT
CCCATGAGTTTCCTGCACATGTCAAAACTAAGAACTTTCCGTTTCAATGGAAATCCAATT
CACTGCGATTGTCACTTAGCATGGATGGCTGACTGGTTACGAGCAAGACCAAGTGCTGGA
CTGTATACTCAATGCACGGAACCAACTGCATTGAGAGGAATGGAAATAAAACATCTTGAA
AGATCCGAATTTGTGTGTAATGTGCTGACGTCACGAAGTCGTCCAACATGTGAGCTTGAT
TCTTACTGTCCTTCTGTTTGTACCTGCGATAATGGAATTGTGGATTGCAGAGATAAAGGC
CTGACGTCACTACCGGCTTCCCTTCCCACAGACGTCACTGAAATACGCTTGGAACGAAAC
ATGATTAAAGTGTTGCCTTCCCGCGCTTTTGCTGGTTACAAGAAACTACGAAGAATAGAT
TTAAGCAACAACATGATCACAGATGTTTCAAAAGATGCATTTCAAGGACTCAAGCAATTG
AATTCGCTGATCATGTACGGGAACAAGATCACAGATTTACATAAGGGAACTTTTGATGGA
CTTGTCAACCTGCAGTTGTTATTGCTGAACGCGAACAAGATTATGTGCCTTCGACATGAC
AGTTTCGACAGCCTTACATCTCTCAAATTACTGTCACTTTACGACAACAAGATTCAGTCA
ATATCAAAGGGAACATTTAAGTCTCTCAAATCAGTTCAAACTCTTCATCTTGCTCAGAAT
CCTTTTATTTGCGATTGCAATCTTCGCTGGTTGGCCGACTATCTGCAAGAGAATCCAGTC
GAGACTAGCGGTGCCAGGTGCGCTGCACCAAGGAAACTAAGCAACAAGAAAATTGCTCAG
ATACGCAGCAGAAAATTTAAATGCGATGCAGACAATGGTTTTCCACCACCACTGGCAGGA
GAGTGCACACCAGAATCAGAATGCCCTGACAGATGCAAGTGTGATGGAACAATCGTTGAT
TGCTCAAGTCAAGAACTGACTGGAATTCCTGATAATATTCCTCCATATGTAACAGATCTA
ATTCTTTCCTTCAATAATATTGATACGCTTGTTCGTGTTGACGTCTTCAAGAAAATGACA
AATTTGAAGAAAATCGATCTGTCCAACAACAAATTGACGAAGATTGAGAAAGGAGCATTC
AATGGTGCAAGCAGCGTGTTGGAACTATGGATAAATGACAATGAACTGAAAGAATTAAAA
GGAGAGATGTTCTCTGGCCTTGACAATCTCAAAACTTTAATGGCACGTAACAATCGTCTT
AGCTGCATCAACAATGAAACCTTTTCCGGATTGTCTTCTCTCTCTCATTTGTCCTTGTAC
GGAAACAAGATTTCAAGCATCGTGGAAGGAGCGTTCGATTCACTTTCGTCTCTTGCACTT
CTAAATCTTCTGTCTAATCCTCTCAACTGCAATTGTCACATGGCATGGCTCTCTGTCTGG
CTTCGTCAGGGGACTTTCTCTTCCGGAAATCCCCGTTGCTCCCAGCCATCCTTTTTGCAC
GGTTTCCCGGTAGCAGACATCAATCCGCAAGATTTTCGATGCACGACACAGGAACTAAGC
GATCCACCGACATGTAAACCGGAAGTGAAATGTCCGCAACACTGCAGTTGTGAAGGCAAC
ATAGTACGATGCATCAACTCTGGTCTGACATCATTTCCTGTTGATGACATACCTGAAGAT
GTCACAGAACTTTATCTGAATCTCAACAAGATAAGAATGATACCGCCAGAGATCAAGAAA
TTTACAAAACTTGTAAAACTGGATCTCAGCAATAACCAGATCGCAACTCTGCAAGATTAC
ATTTTCTCCAACTTCACTCGACTCTCCACTCTCTTGCTTGCCTATAACAAGTTGCGTTGT
ATTCCACCCAAGGGTTTCGTCGGCCTCCGTAATCTCCGGATATTGAGTCTTCACAGCAAC
GAGATATCAACTGTAGCAGATGGAACTTTTGACGACCTGGTCTCTCTATCACATACTGGG
TTTGGTTCAAATCCTTGGTATTGTGATTGCAACCTTGCTTGGTTCAATGAATGGATAAAT
GAAGATTACTTAGAACCAGGAATTGCGCAATGTTCCGGTCCTCCACCTGTCGCTGGAATG
GTCTTGCTGACAACTCCTATATCCAAGTTCGTCTGCGCTGGTCCACTGAGTTTGCCGATT
GCATCAAAGTGTGATCCATGTTTGTCAACTCCTTGCCTTCATAATGGAACTTGCAGATTT
CATCCAATGGATTATTACCAGTGTATATGTCCGCCAGGATTCAAAGGAAAACATTGCGAG
ATGCCTGTGAATGCATGTAACCTCAAACCTTGCTTGAATGGAGCATCATGCAGAGGTAGA
GACGAGATATCATACACATGCACTTGCCCAGCCGGATTCAGTGGAATGAATTGTGAACAG
AACATCAACGACTGCTTGCCAAGCCCATGCAGAGCTGAAAACGCAACTTGTATTGATGGT
GTCAACTCGTATAAATGCAGATGCCCCCCTGGATGGTCTGGTGAATATTGTGACATTGAA
GTTGAGGATCCGTGCATTTCTGAAACTTGTTTGAACGGTGGAGAATGTGTGACTGTATTT
GGAAGCGAAAGCAAGATTTCTTACAGATGCGATTGCAAACCTGGTTTCCGTGGACAAAAC
TGTTCGGAAGTATTTGACCCATGTTTGAATCACAAATGTGAAAATGACGGACGCTGTGTT
TGGGATGACACGAGTTCGTCTGGATACAGATGTGAATGCCCACCCAGGACACGTGGTCAA
TATTGTGAATTTCGTCACGGAGAAACAACACTCATACAACAGGACGATCCATGTCACAAT
CACGATTGTAAGAATGGAGCGCAGTGCTTCGTTGAAGCAGGTGGATCATCGGATTTCACT
TGCAAATGTCTGCCTGGATATGCAGGAGTCAAGTGTGAAATTTTATCTGGTGTCGGTATA
AGAAGAAATGGAAGTTTTATTCAACTGCCAACAACATTAGATGGAATGGAAGAAATTCAT
ATCAACCTTGAAATTTCAACAAAGGAGATGAATGGAGTGATCATGTATGCTGGCAATTCA
GCTCAACATTTAGCACTGGAACTTTTCACGGGATATGTCAGATTAAGTTGCAATGGAATA
AACTCTTACAGCAGTGCAGTCATCAATGATGAAGAATTCCATCAGATTGAAGTTGATATA
AAGGCAAGTGACATCACATTGACTGTTGATGGTGTTCAGACACATGGAGCACCATCAGTG
AGACTTATCAGCATCACATCATACTTGTTCCTTGGAGGAATGCCGGCAGATGTATTGATA
GGTGCCAGACAGAGTTGGCATATTCGTAACACGACAAGTTTCATTGGTTGCATTCGGAAT
GTGATTGTTGGTGGAAAACCAGTTAATTTCTTCACTGCAAGACAAGGAGAACATGATGAT
CTGTTCAGTCAAGATGTTGGGATCAAACCAGGATGTTCGGCAGATGGAGAAGCTTCATCA
TGCTATAAATGTCTTCATGGAGATTGCATATATTCTGAAGAATCTGGATTCACTTGCAGT
TGTTACAGAGGTTACACAGGACCAGCCTGTGATATTACCGATGAACCTCAGACAACACCA
TGTTCTAACAATCAATGTCATCATGGATCGTGTAGAGTTGATTCCTCTTCATCAAATTCC
TACATCTGTGATTGTGATGCAGGATACAGTGGATCCATATGTGATGTCAGAGATTACTGT
GCCGGTGTTGACTGTGGACAGCACGGCACCTGTGTCACTGCTGCATCTGGATACATTTGT
AAATGCAAGAGAGGATACACGGGAAGACATTGCGAAAGAAGAATACGACGTTGCAAAGGC
ACAAAAACAAGACAATTTGTCCAAATAACAATCCCTCGTCCCTCCGCACCTGGTCTTTCA
TCATCAAGCTCCTCCATGATGTGCAAGAGCTCAAGAAAAATGTCAAATCTTGTGTGTGAT
GGTTCGAACTGTTCACGACGTAGAAAATCAGCCGCTAGAAGGCGCTCCAGAAGCTCGCAG
GCGACGTTACCCGGCTCCTTCAGCTTCTCAGATCAGGAGGAGCCGGTCGCGACGTGCTGT
GTTCCTCTTCGACAGAAAACAAAAAGTGTTGAACTTGTTTGTGACGACGGGTCGAGGATA
ATGCAAGAGGTCACTAAAGTTCAAAGTTGCGGATGTCAGACGTTAAACGCCTCACCGCTC
GAACGAATGTATTTGAAGAATGTTTTGCCTAGAGTATAAATAGTTTATCAA
| Gene3D |
LRR_dom_sf (IPR032675) - T[1-131] 6.7E-30 - T[140-353] 9.6E-67 - T[365-581] 3.9E-61 - T[588-774] 4.7E-52 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[20-42] 26.0 - T[43-66] 5.4 - T[170-192] 86.0 - T[193-216] 5.6 - T[217-240] 0.11 - T[241-264] 1.6 - T[265-288] 0.014 - T[419-442] 7.1E-4 - T[444-466] 330.0 - T[467-490] 3.7 - T[491-514] 0.012 - T[641-664] 0.0059 - T[665-688] 4.2 - T[689-712] 7.4E-4 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[21-42] 6.888 - T[45-66] 7.835 - T[195-216] 7.558 - T[219-240] 5.356 - T[243-264] 5.471 - T[267-288] 7.042 - T[396-417] 4.624 - T[421-442] 8.028 - T[445-466] 4.924 - T[469-490] 6.68 - T[493-514] 6.88 - T[620-641] 5.456 - T[643-664] 8.143 - T[667-688] 6.218 - T[691-712] 6.703 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[22-80] 3.7E-8 - T[172-230] 7.4E-13 - T[247-301] 9.3E-10 - T[667-718] 2.2E-10 |
| SMART |
Cys-rich_flank_reg_C (IPR000483) - T[78-127] 3.7E-12 - T[300-349] 1.6E-8 - T[526-575] 8.5E-11 - T[724-773] 3.9E-13 |
| Pfam |
Cys-rich_flank_reg_C (IPR000483) - T[104-126] 0.53 - T[325-348] 1.5 - T[550-574] 1.9E-5 - T[749-773] 0.0062 |
| SMART |
LRRNT (IPR000372) - T[142-174] 1.0E-6 - T[367-399] 7.9E-6 - T[590-623] 4.1E-4 |
| Pfam |
LRRNT (IPR000372) - T[143-169] 6.5E-6 |
| Pfam |
LRR_5 (IPR026906) - T[414-525] 3.4E-12 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[783-820] 0.016 - T[822-859] 9.0E-4 - T[861-898] 5.9E-10 - T[902-942] 0.31 - T[994-1033] 0.25 - T[1298-1332] 0.0063 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[785-820] 18.544 - T[822-859] 20.108 - T[861-898] 20.811 - T[901-942] 17.28 - T[944-983] 16.333 - T[994-1033] 17.913 - T[1208-1251] 8.641 - T[1257-1295] 14.433 - T[1296-1332] 17.225 |
| SMART |
EGF-like_dom (IPR000742) - T[786-820] 1.3E-5 - T[825-859] 3.8E-7 - T[864-898] 1.6E-6 - T[904-942] 4.7E-6 - T[947-983] 2.9E-4 - T[997-1033] 1.3E-5 - T[1211-1251] 0.36 - T[1260-1295] 1.7E-5 - T[1299-1332] 2.5E-5 |
| Pfam |
EGF-like_dom (IPR000742) - T[787-818] 1.8E-7 - T[826-855] 3.0E-5 - T[908-939] 1.6E-4 - T[1261-1291] 1.2E-4 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[808-819] . - T[808-819] . - T[847-858] . - T[847-858] . - T[886-897] . - T[886-897] . - T[930-941] . - T[930-941] . - T[971-982] . - T[1021-1032] . - T[1021-1032] . - T[1239-1250] . - T[1239-1250] . - T[1283-1294] . - T[1283-1294] . - T[1320-1331] . - T[1320-1331] . |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[861-886] . |
| Pfam |
EGF-like_CS (IPR013032) - T[874-892] 6.7E-8 - T[953-975] 0.055 - T[1003-1027] 0.0012 - T[1305-1326] 0.012 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[877-888] . |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[1020-1212] 2.46E-28 |
| ProSiteProfiles |
Laminin_G (IPR001791) - T[1036-1212] 31.808 |
| SMART |
Laminin_G (IPR001791) - T[1057-1186] 8.3E-21 |
| Pfam |
Laminin_G (IPR001791) - T[1066-1186] 1.4E-17 |
| ProSiteProfiles |
Cys_knot_C (IPR006207) - T[1338-1459] 10.079 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SLIT1_HUMAN | 43.851 % | 1176 | 0 |
| SLIT3_HUMAN | 43.431 % | 1197 | 0 |
| SLIT2_HUMAN | 44.513 % | 1226 | 0 |