- Clone 'cilv007d09' >
- Clone 'cima005a11' >
- Clone 'cien143504' >
- Clone 'cima849b09' >
- Transcript 'Haaura.CG.MTP2014.S8...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S842.g06853.01.t
Possible name(s)
FSHR; LHCGR; TSHR
Gene model
Location
S842 [8,854 / 16,194]
Amino acid sequence
Length: 960
>Haaura.CG.MTP2014.S842.g06853.01.p
MAKKQVFVILFAVCWLTSIQCKRIGNVQCNTNDDTISTIQFCSGIPDCPDESDEITEFSS
EHDVVSCTNAQNNVNKTCLTKRKNLCEDILICRENFTKCDLHCEGYYKCQDSGKCVSRDT
LCDGNSCNGCPEEDHGWTNGIGFKCHRRGVECILPQQLLWDGVADCDGGLDLCYESFIPP
MYNASDFRQLTDSRFVPSRCFQCLHDDVIIPRSRVCDGVFDCPDLSDECLCTGDSPPICK
NIITRIQGIEGQKDIVMLKNSSCQFGEVKCYNGSCIPRSEVCDGKVQCSDAEDESYLYCH
GTKPCFWSTRKDSYCRCRYKSKLCRNTIATPCDGVEECFCSCGDPSGEDECGAKCFTENH
VNVRRSIPQKPSHDEEHVACHLLYPRPQSCEVIHPNGTQSTMMLNDEIVCDGYADCPSEE
DEIFCPLRFPCPAKNKAMVSIFRNLTCDGVMDCDNGEDEFNDQCNESRFFCSSLGGTLVS
INKRFVCDGLYSCDNSDDERNCTDGRYYCESKEPLFVDGYKLFNGRVDCSDWSDECPSNF
SLRQYNIFHSKYEMIGNGFLRVLVWIMGILALFGNAAVVINVLTEKFNDRKKRIPANLRA
NQLFILNLAFADILMGIFLLGIGISGFIMKGSYCLKDLDWRSGSTCTIFGVLSVLSSETS
VATMILLTASRLYAVNKPFLCLSSPKRSKVFLAIILSWIFSFTLALIPLAPSLERYFIDQ
VTLPNNPFSQNLTATLPNARMLAENALAYDLSPNSSESGIAESLRSVNTSSWSGLKRIFE
DNTAHPHYYTFDKYFGYYSINSVCIPKFFVTTADNAWGFSLSVTLFNFFSFLFVASSYIW
ILVKASKNRDIRNLSADDSRYIGIQQKILRLIITDLCCWMPICIIAFCKISGAHVSDTAY
AVAAIVLLPINSALNPILYSDIPDKIQSFFSDKFTKISRTLSSVSPTEDTAVTHTTSVI*
Nucleotide sequence
Length: 2,880
>Haaura.CG.MTP2014.S842.g06853.01.t
ATGGCTAAAAAACAGGTGTTTGTAATTCTATTCGCGGTTTGTTGGTTGACTTCTATTCAG
TGCAAAAGAATAGGTAATGTTCAATGTAACACGAATGATGATACCATATCAACCATTCAA
TTCTGTAGCGGCATCCCAGATTGCCCTGACGAAAGTGACGAAATAACGGAGTTTTCCTCA
GAACACGATGTCGTAAGTTGTACCAATGCACAGAACAACGTAAACAAAACGTGTCTGACA
AAAAGAAAGAACTTGTGTGAGGATATTCTGATATGTAGAGAAAATTTTACGAAATGTGAT
CTACATTGTGAAGGATATTATAAATGTCAAGACAGTGGGAAATGTGTGTCAAGAGATACG
TTATGTGATGGAAATTCATGTAATGGTTGCCCTGAAGAAGATCACGGTTGGACCAATGGA
ATCGGTTTCAAATGTCACAGACGTGGTGTAGAATGTATTTTGCCACAACAACTACTATGG
GATGGAGTTGCTGACTGTGATGGTGGATTAGATCTATGTTATGAATCTTTTATACCACCG
ATGTATAATGCTAGCGATTTTCGTCAGCTTACTGATTCTCGTTTCGTACCTTCGCGATGT
TTCCAATGTCTCCATGATGACGTTATCATACCGCGATCACGCGTATGTGATGGAGTATTT
GATTGTCCAGATTTGTCTGACGAATGTCTCTGTACCGGAGATTCTCCGCCAATTTGTAAA
AATATCATCACTCGCATCCAAGGAATTGAAGGGCAAAAGGATATCGTGATGTTAAAAAAT
AGCAGCTGTCAGTTCGGTGAAGTCAAATGCTACAATGGAAGTTGTATCCCTCGTTCTGAA
GTATGCGATGGAAAAGTTCAGTGTTCAGATGCAGAAGATGAATCTTACTTATACTGTCAC
GGTACAAAGCCTTGCTTCTGGTCGACGAGAAAAGATTCATATTGCAGATGTAGGTACAAG
TCGAAATTATGTCGAAATACGATTGCAACCCCCTGTGACGGTGTAGAAGAGTGTTTTTGC
AGCTGCGGAGATCCTTCGGGAGAAGATGAATGCGGTGCTAAATGCTTTACGGAGAATCAT
GTTAACGTTCGTAGAAGTATTCCACAAAAGCCGAGCCATGATGAAGAACATGTAGCATGT
CACCTGCTATATCCTCGTCCTCAATCTTGTGAAGTGATACATCCCAACGGTACACAATCG
ACCATGATGTTGAATGACGAAATTGTGTGTGACGGGTACGCCGACTGTCCATCCGAAGAA
GATGAAATTTTTTGTCCCTTGCGATTCCCTTGTCCTGCAAAAAACAAGGCAATGGTCAGC
ATCTTTAGAAATCTAACTTGCGATGGCGTGATGGATTGTGATAACGGAGAAGATGAGTTT
AATGATCAGTGTAATGAAAGCAGATTTTTTTGCTCTTCCCTCGGTGGAACATTGGTCAGC
ATTAACAAAAGGTTTGTTTGTGATGGTTTATACTCGTGTGATAATAGTGATGACGAAAGA
AACTGCACTGATGGTCGATATTATTGTGAAAGCAAAGAACCGTTGTTTGTTGATGGATAT
AAGCTTTTCAACGGACGAGTGGATTGTTCAGATTGGAGTGATGAATGTCCTAGCAATTTT
TCGTTGAGACAGTATAATATATTTCATTCAAAATACGAAATGATTGGGAATGGATTTCTT
CGTGTGCTAGTCTGGATCATGGGAATCTTGGCCTTGTTTGGAAATGCGGCCGTCGTCATT
AACGTCCTTACTGAAAAATTTAACGATCGGAAGAAACGTATTCCTGCAAACTTGAGAGCG
AATCAACTCTTCATACTGAATCTTGCTTTCGCTGATATTTTGATGGGAATCTTTTTGTTA
GGTATCGGGATATCTGGATTCATTATGAAGGGCTCGTACTGCTTAAAAGACCTTGATTGG
AGATCTGGATCAACCTGTACTATATTTGGAGTTTTATCTGTTCTGTCGAGTGAAACATCA
GTGGCAACAATGATTCTTTTGACGGCTTCACGTCTGTATGCTGTTAACAAGCCATTTCTC
TGTTTGTCGAGTCCAAAAAGGTCAAAAGTTTTCCTCGCTATCATCCTCTCATGGATCTTC
TCGTTTACTTTAGCTCTGATTCCTCTCGCACCATCGTTGGAGCGATATTTCATTGATCAA
GTTACATTGCCCAACAATCCGTTTTCGCAAAATTTGACGGCAACTCTTCCCAACGCTAGA
ATGCTTGCTGAGAACGCTTTGGCCTACGACTTATCGCCTAATTCATCTGAATCAGGTATT
GCCGAATCTTTGCGCTCTGTTAATACCTCTTCCTGGAGTGGTTTGAAAAGAATTTTTGAA
GACAACACTGCGCATCCACATTACTATACATTTGATAAATACTTCGGATACTACAGTATC
AACAGCGTGTGCATTCCAAAGTTTTTTGTTACTACCGCGGATAATGCCTGGGGTTTTTCG
CTCTCCGTCACTCTCTTCAACTTCTTTTCTTTCCTGTTCGTTGCATCTTCATACATTTGG
ATACTCGTTAAGGCGTCAAAAAACAGAGATATACGAAACTTATCAGCGGACGATTCCCGT
TACATAGGTATCCAGCAAAAGATTCTCCGTCTGATCATCACTGATCTCTGTTGCTGGATG
CCGATCTGCATTATCGCTTTTTGTAAAATCTCTGGAGCGCACGTTTCAGACACTGCCTAC
GCCGTAGCAGCCATTGTTCTTCTTCCGATAAATAGCGCCCTCAATCCAATCCTGTATTCA
GATATTCCGGATAAAATTCAGTCTTTCTTTAGCGATAAGTTTACCAAAATCTCTCGTACA
TTGTCATCTGTATCCCCGACTGAAGATACCGCAGTTACACATACAACCTCGGTTATATGA
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[20-60] 0.29 - T[194-233] 0.012 - T[262-301] 1.4E-7 - T[424-462] 0.54 - T[463-504] 0.056 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[21-56] 7.46E-5 - T[199-231] 1.96E-6 - T[255-299] 1.18E-8 - T[463-511] 4.71E-5 |
| PANTHER |
TSHR/LHCGR/FSHR (IPR034298) - T[40-105] 4.4E-89 - T[215-945] 4.4E-89 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[201-232] 8.525 - T[262-300] 11.5 - T[424-465] 8.512 - T[463-503] 9.55 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[201-231] 4.66476E-4 - T[263-294] 9.84976E-7 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[262-294] 1.0E-7 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[275-299] . |
| PRINTS |
GPCR_Rhodpsn (IPR000276) - T[559-583] 2.3E-17 - T[601-622] 2.3E-17 - T[653-675] 2.3E-17 - T[689-710] 2.3E-17 - T[864-888] 2.3E-17 - T[901-927] 2.3E-17 |
| ProSiteProfiles |
GPCR_Rhodpsn_7TM (IPR017452) - T[574-919] 21.936 |
| Pfam |
GPCR_Rhodpsn (IPR000276) - T[599-709] 1.9E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSHR_HUMAN | 33.333 % | 87 | 2.31E-17 |
| LSHR_HUMAN | 32.278 % | 92.8 | 3.05E-19 |
| FSHR_HUMAN | 29.5 % | 87.4 | 1.5E-17 |