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  1. Clone 'citb029p07' > 
  2. Transcript 'Boschl.CG.Botznik201...' > 
  3. Transcript 'Haaura.CG.MTP2014.S8...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S85.g01809.01.t

Possible name(s)

SEMA6A; SEMA6C; SEMA6D

Gene model

Haaura.CG.MTP2014.S85.g01809

Location

S85 [67,989 / 78,373]

Sequences

Amino acid sequence

Length: 1,419

>Haaura.CG.MTP2014.S85.g01809.01.p
MYDNCILLPISLCSCFHCIGRKCYNGVIFGFNIQYSQRTSTTQGRTMDSSSKTLHIIQFL
FFVSVFGINTCYALPEDWKPRATLNFQQTSLFKIFNGKGLQGQSSKLTDLQEVKIIDDEY
ALISSRNHIYVVDLKTISDEGNDVKFSQVIQWLPENVTTCALKADGKRRCENYIRVLTSM
SENYYLICGTNALKPKCREYKWNGTQFTGYIAGNRYTDTNKCPLDDEPSLAYVYSGGNLY
TATRINYRQDPTVRRTPVDGRMPQADFGPNMSSGSQVVRDEPLPHLSTDNNEASLLNDPV
FVAAMETSEKVFVFFREIATESFGNGDVTFSRVAQVCKNDKGGSKNFRAHKWTSYFKARL
NCSAHGSKPFYFNELRHLSREVVINGVTTVFAVMTTPEDSIWGSAVCAYTVPAIEKAMTG
DFRKHSTFDATSECWSKTGQKQPYGLHPTVCPSQYEDTRSLPNNDLQFRRNHPLMEASVQ
PITDIPLFMRTQSRYIFSAIDVELEPNVEDSSQLISILYIGTNDGHLLTVVPYPYDTDDR
YDNGKKRGDGAFVQELEVYNPRECASPSGKSSPTSEGSVPIEGSETADDAKRVISITAVK
GRDLLLVAFRNCIISVPKKMCALQICRKKCVQSGNPYCGWLDGSCVAVTEENKNKIEQDL
FAKRTDLPECTTGFTDTGTSPTSSDVKVNECTAASSFAVPLSISMSVCFFVVLIVFLVVM
KCQHRLCGSCQRSRRNKAHASLDQDFNTANNSSNKRPIYKGPRSASITVSNSFATHRPVI
AKPSNASSYVGYNLEETSGSSNALDTRGQPSRNMYASVASVANSFTSDSHQGNSVTSLED
VERRKFHGVNIVEDVRPSGDRVVDNQSRGSETNLNNNNTKKTIGVAIAMTHADSPLRRRK
QSFGDVIDRPSTPTTTRIRMGSLSGTCAVGRINSPNHTWKPQHPRIVTNPNFMAVSPMPN
NVLRSVSQDSESKSVNVDSDEDRRKSCGGLPKPPVSGLAGRCLSSKEKMVSGYSEIANAQ
NHIFGRESTSPEPEYENTRMLLQNSEPIKPNPPTPPPANLKPGRKLSSFTTSHFNTSWFP
ASCSRSYKNGMISNLEEIKALKDTEGIRSSSSSSGVMSSSSSASGGNICPEKYPEICEKN
RAGKRKEQACRKDMIVAKGLLSAQVMLDQHPKKNHLSDDGYGSGTVSNHLKRRDFKDIPE
YQNIPGSGTVGKQRSRAPSADYLGKDSSSDDECIIKELGDINWDRLKKDSKKKSSMSSNE
PSRKKKSIKKGKKNADKRGLVVDLSSPSDSDNVFYDVPPISLVDFDTEDGGRDAVEDECN
WQRENNFNCRQALDDSFVETGREDSLNNSPSSKYQYAFHTMRPPGRMRQKLPRLRCGEKE
CDATLIPSLFRQFSLYVVLKWEWKTFLALFPIRIQFYF*

Nucleotide sequence

Length: 4,716

>Haaura.CG.MTP2014.S85.g01809.01.t
GATAAACTGCTACAAGGCAGGAATCTATTGTTTACTTGGAGGGCATTCATTCCAGTACAA
ATAATTAGCTGTAAGTACGAAGCTGAGGATAATACCGAACAACTAAACCTGCTGATAAAA
CGTGTGCGAGTGGTGTGCGCGGAGAATACAGCGAATTTGAAGCCCTAGGAAAAAAAGAAG
TTTATGTATGATAACTGTATACTACTGCCTATTTCTTTGTGTTCATGTTTTCATTGCATA
GGAAGAAAGTGCTACAATGGAGTAATATTTGGCTTTAATATCCAATATAGTCAACGAACA
AGTACAACGCAGGGAAGAACCATGGATTCCTCATCAAAGACACTGCACATCATCCAGTTT
CTGTTTTTTGTTTCTGTATTTGGGATAAACACCTGCTACGCTCTCCCGGAAGACTGGAAG
CCACGAGCAACATTAAATTTTCAACAAACTTCACTGTTCAAAATATTCAACGGCAAGGGC
TTGCAGGGACAATCAAGTAAGCTGACAGATCTTCAAGAAGTGAAAATCATCGATGATGAA
TATGCATTAATATCATCTAGGAATCACATCTACGTTGTTGATTTGAAAACTATTTCTGAT
GAGGGCAACGACGTCAAGTTCAGTCAGGTCATTCAGTGGTTGCCTGAAAATGTTACCACT
TGTGCACTCAAGGCAGATGGCAAAAGACGTTGTGAGAATTATATTCGCGTTCTCACCAGC
ATGTCCGAAAACTACTATCTGATTTGCGGAACAAATGCATTGAAACCCAAATGTAGGGAA
TATAAGTGGAATGGAACGCAGTTTACTGGCTACATTGCTGGAAACAGATATACCGATACA
AACAAATGCCCGTTAGACGACGAACCTTCTCTTGCATACGTGTACAGCGGAGGAAATCTT
TACACCGCAACGAGGATAAATTATCGCCAAGATCCAACTGTTCGCCGTACGCCGGTCGAC
GGTAGAATGCCCCAGGCCGATTTTGGACCGAATATGTCTTCCGGTTCGCAGGTGGTTCGC
GATGAACCGCTGCCCCATCTTTCGACCGATAACAACGAAGCGTCGCTGCTCAACGACCCG
GTCTTCGTTGCGGCAATGGAAACCAGCGAGAAGGTTTTCGTGTTTTTCCGAGAAATCGCT
ACGGAAAGTTTCGGAAATGGAGACGTTACATTTTCGCGGGTCGCCCAAGTATGTAAAAAC
GACAAGGGAGGAAGCAAGAATTTCCGTGCTCACAAATGGACCTCGTATTTTAAAGCAAGG
CTTAATTGCTCCGCACATGGATCAAAGCCATTTTACTTCAATGAATTACGTCATCTCAGC
CGAGAAGTCGTCATCAATGGCGTAACTACCGTATTTGCTGTCATGACAACACCAGAGGAT
TCGATTTGGGGTTCTGCAGTTTGTGCCTATACTGTTCCCGCAATAGAAAAAGCCATGACA
GGGGACTTTCGTAAGCATTCGACGTTCGATGCAACGTCGGAATGCTGGAGTAAAACAGGC
CAAAAACAACCTTACGGGTTACATCCTACAGTGTGTCCATCGCAGTATGAAGACACAAGA
TCGCTCCCAAACAACGATCTGCAATTTCGCCGTAACCACCCACTCATGGAAGCCTCCGTA
CAACCGATAACAGATATCCCGTTATTCATGCGCACTCAATCTCGCTATATATTCTCTGCA
ATAGATGTGGAACTAGAACCGAATGTGGAAGACAGCAGCCAGTTAATCAGTATTTTGTAT
ATCGGTACCAACGACGGTCATCTTCTGACAGTCGTTCCTTACCCGTACGACACTGACGAT
CGTTACGACAACGGGAAAAAGCGCGGCGATGGAGCGTTCGTTCAAGAATTGGAGGTATAC
AATCCGCGAGAATGCGCGTCACCATCCGGAAAAAGTTCTCCCACAAGCGAAGGCAGTGTT
CCGATCGAGGGTAGCGAGACCGCCGATGATGCGAAACGTGTTATCAGTATCACTGCAGTC
AAAGGTCGTGACCTCCTGCTGGTTGCTTTTCGCAACTGCATTATATCTGTTCCGAAGAAG
ATGTGCGCTCTACAAATCTGCAGAAAGAAATGCGTACAGTCTGGCAACCCATACTGCGGA
TGGTTAGACGGTTCGTGCGTTGCTGTGACTGAAGAAAACAAGAACAAAATAGAGCAAGAT
TTGTTTGCCAAGCGAACAGATCTTCCCGAATGCACTACTGGATTTACAGATACTGGAACC
TCTCCTACCTCGTCCGACGTAAAAGTAAACGAATGCACAGCGGCCTCCTCCTTCGCTGTC
CCTTTGTCGATATCTATGAGCGTTTGCTTTTTCGTGGTGCTTATCGTTTTCCTCGTCGTC
ATGAAGTGCCAGCACCGTCTTTGTGGAAGTTGCCAAAGGAGTAGAAGAAACAAGGCACAT
GCAAGTCTCGATCAAGATTTTAACACGGCTAACAACTCTTCAAATAAGCGTCCAATATAC
AAGGGTCCGCGCTCAGCTAGCATTACTGTTTCGAATTCGTTTGCTACGCACCGTCCCGTT
ATAGCTAAACCTTCGAACGCGTCTTCCTACGTCGGTTACAATCTTGAAGAAACGAGTGGA
TCATCCAACGCTTTGGACACTCGTGGTCAGCCATCTCGCAACATGTACGCTTCGGTCGCC
TCCGTCGCGAACTCTTTCACGAGCGATTCTCACCAGGGTAATAGCGTTACGTCACTGGAA
GATGTCGAACGCCGAAAATTCCACGGAGTCAATATCGTGGAAGACGTTCGGCCGAGCGGC
GATCGTGTTGTCGACAACCAGTCCCGAGGAAGCGAAACAAATTTGAACAATAACAATACC
AAGAAAACTATAGGGGTCGCGATTGCGATGACACATGCTGACTCTCCGCTGAGAAGACGA
AAGCAGTCGTTCGGCGATGTGATCGACCGGCCGTCAACGCCGACTACGACGCGCATACGC
ATGGGTTCTTTGTCAGGAACATGCGCGGTGGGAAGAATTAACAGCCCGAACCATACCTGG
AAGCCGCAACATCCCAGAATCGTAACAAATCCCAATTTCATGGCCGTCTCTCCCATGCCC
AACAATGTGTTGAGATCCGTATCACAGGATTCTGAGTCGAAATCCGTTAATGTAGACAGT
GATGAAGACAGACGTAAAAGTTGCGGAGGTCTGCCAAAGCCTCCTGTCAGTGGTTTAGCA
GGAAGATGTCTGTCGTCAAAAGAAAAGATGGTCTCGGGCTATTCTGAAATAGCAAACGCA
CAAAATCACATTTTCGGCAGAGAGTCGACTAGTCCGGAACCGGAATACGAGAATACTCGG
ATGCTTCTACAAAACAGTGAACCCATCAAGCCCAACCCACCTACTCCTCCTCCTGCCAAT
CTAAAGCCTGGTCGGAAGCTGTCATCTTTCACGACCTCTCATTTCAATACTTCTTGGTTC
CCTGCAAGTTGTTCCAGATCGTACAAAAACGGGATGATTAGCAATCTGGAGGAGATCAAA
GCGCTCAAGGATACTGAAGGAATCAGATCTTCGTCCTCCAGCAGCGGAGTGATGAGCTCT
TCTTCCTCTGCCTCCGGAGGCAATATTTGCCCGGAAAAGTATCCCGAAATTTGTGAAAAA
AACAGAGCGGGAAAAAGAAAAGAACAGGCGTGTAGAAAGGACATGATCGTTGCAAAGGGC
CTGCTTTCTGCTCAAGTCATGTTGGATCAGCATCCGAAAAAAAATCATCTTAGTGATGAC
GGTTACGGTAGTGGCACGGTTTCCAATCATTTGAAGAGAAGAGATTTTAAAGATATTCCC
GAATATCAAAATATACCAGGTTCCGGAACCGTTGGGAAGCAGAGGAGTAGAGCTCCTTCT
GCTGACTACTTGGGTAAAGATTCTTCCTCCGATGATGAATGCATCATCAAGGAACTCGGA
GACATCAACTGGGATCGCTTAAAGAAAGATTCGAAGAAAAAAAGCAGTATGTCTTCTAAC
GAACCCAGTCGCAAGAAGAAATCCATTAAAAAGGGCAAAAAGAACGCCGACAAACGCGGG
CTAGTTGTTGATCTATCGTCCCCTTCCGATAGCGACAACGTATTCTACGACGTGCCACCC
ATTAGTTTGGTAGATTTCGATACTGAAGATGGCGGTCGAGATGCAGTTGAAGATGAGTGT
AATTGGCAAAGGGAAAACAACTTCAACTGTCGGCAAGCCCTGGACGACAGCTTTGTAGAA
ACTGGCCGTGAGGACTCTCTCAATAATTCGCCGTCGTCTAAGTATCAGTACGCCTTTCAC
ACAATGAGACCACCCGGCCGGATGCGCCAAAAACTACCCAGACTGCGTTGTGGTGAGAAG
GAATGCGATGCAACATTAATTCCTTCCTTATTTCGCCAATTTTCTCTCTATGTGGTACTC
AAGTGGGAATGGAAGACATTTCTTGCTTTGTTTCCAATTCGCATTCAGTTTTATTTTTAG
TTCCATTCTGTCCGTATTTTATTTTGTCATGCGTGCAGTACCATGCTATCTGCTTAAAAT
GACAGTATGGTTAGAAAGGCATACGAATCAGCCTACTACCGTACTTGCTTGTTCTGTATT
ATTTGTGCCGTTGTTTTGTTTCTCCTACTGCCAGTTGCACCAAGACTGTAGTTTGCGCAT
CTGTGATGTGTTTTATTAGATTTGCGTTCAAGGTACTGTTGCTTGTTTTTACAAATCGTT
ATTTTACAGAAATATATTTGTCGTTTTCATGATGCT

InterProScan

Gene3D
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[71-617] 1.0E-97
ProSiteProfiles
Semap_dom (IPR001627) - T[81-618] 68.822
PANTHER
Semaphorin (IPR027231) - T[109-873] 2.9E-113
SMART
Semap_dom (IPR001627) - T[111-575] 7.4E-58
SUPERFAMILY
Semap_dom_sf (IPR036352) - T[121-561] 1.15E-82 - T[590-622] 1.15E-82
Pfam
Semap_dom (IPR001627) - T[122-535] 5.4E-78

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SEM6A_HUMAN 30.47 % 287 2.65E-80
SEM6D_HUMAN 29.846 % 285 2.31E-79
SEM6C_HUMAN 28.571 % 284 4.08E-80