Aniseed - Transcript Card

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S890.g07011.01.t

Possible name(s)

EXOSC4; EXOSC5

Gene model

Haaura.CG.MTP2014.S890.g07011

Location

S890 [14,761 / 17,022]

Sequences

Amino acid sequence

Length: 223

>Haaura.CG.MTP2014.S890.g07011.01.p
MDIDFDIPTVSLKPMRCEQNALKKPDGSVNYWEGDTNVLVAVYGPADCKESKRLTNKCCI
EVSLRPKIGIPGVAEKYFEHTIRSIFETVVLTSLHPRSMICIVVQIMQDKGSDAGISMRN
MPAAVTVTMQKEVEEEDSEIEIPQKIILSPTTEDESNAAALLLFVFDSVNKNIICTTCKG
SLAPAMYKLCLESSQRACEVTFQFYRDSICKTESSNSETRYS*

Nucleotide sequence

Length: 669

>Haaura.CG.MTP2014.S890.g07011.01.t
ATGGATATTGATTTCGATATCCCAACTGTATCATTAAAACCTATGAGATGTGAGCAAAAT
GCTCTGAAGAAGCCAGATGGATCTGTAAATTATTGGGAAGGTGACACAAATGTTCTCGTA
GCTGTGTACGGACCTGCAGACTGCAAAGAAAGCAAACGTCTCACGAACAAATGTTGCATT
GAAGTTTCACTCCGTCCGAAAATCGGTATTCCTGGCGTCGCCGAGAAGTATTTCGAACAC
ACAATAAGGAGTATATTCGAAACAGTGGTTTTGACATCGTTACACCCACGTTCCATGATC
TGTATAGTTGTCCAAATCATGCAAGACAAGGGATCCGATGCCGGTATTAGCATGAGGAAC
ATGCCAGCAGCTGTCACTGTGACGATGCAAAAAGAGGTAGAGGAAGAAGACAGTGAAATA
GAAATCCCTCAGAAGATCATTCTCTCGCCTACTACAGAAGATGAATCTAATGCGGCGGCT
TTGCTACTGTTTGTATTCGACAGCGTTAACAAGAATATCATTTGCACAACTTGCAAAGGC
TCTCTAGCGCCTGCTATGTACAAACTTTGCCTAGAAAGTTCCCAGAGGGCTTGCGAAGTA
ACATTTCAGTTTTATAGAGATTCGATCTGTAAAACTGAATCGTCCAATTCTGAAACAAGA
TATAGCTAA

InterProScan

Pfam	ExoRNase_PH_dom1 (IPR001247) - T[12-118] 5.7E-10
SUPERFAMILY	Ribosomal_S5_D2-typ_fold (IPR020568) - T[12-114] 6.51E-20
Gene3D	PNPase/RNase_PH_dom_sf (IPR027408) - T[12-214] 7.8E-38
SUPERFAMILY	ExoRNase_PH_dom2_sf (IPR036345) - T[118-212] 1.61E-10

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
EXOS5_HUMAN	39.815 %	152	7.21E-46