- Transcript 'Phfumi.CG.MTP2014.S1...' >
- Clone 'cien42846' >
- Transcript 'Haaura.CG.MTP2014.S9...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S929.g07135.01.t
Possible name(s)
GRWD1; RBBP4; RBBP7
Gene model
Location
S929 [19,568 / 20,958]
Amino acid sequence
Length: 434
>Haaura.CG.MTP2014.S929.g07135.01.p
ETRFLNFSMADKDNYDEAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPEV
AKPEGKDYAIHKLILGTHTSDEQNHLIIASVQLPTDDATFDASHYDSDRGEFGGFGSVSG
KIEIETKINHEGEVNRARYMPQRPCIIGTKTPSSDVLVFDITKHPNKPDPNGICKPDIRL
KGHQKEGYGLSWNPSMPGHLLSASDDHTICLWDVRDKPKDARELLAKSVFTGHTAVVEDV
SWHLLHDSLFGSVADDQKLLIWDTRCPNTNKPSHIVEAHTAEVNCLSFNPFSEFILATGS
ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEE
QSAEDAEDGPPELLFIHGGHTAKISDFSWNINEPWVICSVSEDNIMQVWQMAENIYNDEE
PDAPNAELEQTST*
Nucleotide sequence
Length: 1,302
>Haaura.CG.MTP2014.S929.g07135.01.t
GAAACTAGATTTCTGAACTTCAGTATGGCAGATAAAGATAATTATGATGAGGCCGTAGAA
GAAAGAGTGATCAATGAGGAATATAAAATATGGAAGAAAAACACTCCCTTTTTATATGAC
CTCGTTATGACGCATGCTCTAGAATGGCCCAGTCTCACTGTTCAGTGGTTGCCTGAAGTT
GCAAAGCCAGAAGGCAAGGATTATGCAATACACAAATTGATATTGGGAACACACACGTCC
GATGAACAGAACCATCTTATTATTGCTAGCGTTCAACTCCCGACAGACGATGCCACTTTC
GATGCTTCTCATTATGATAGTGACAGGGGGGAATTTGGAGGGTTTGGGTCGGTCAGTGGT
AAAATTGAAATCGAGACCAAAATAAATCACGAAGGGGAAGTCAATCGTGCACGTTACATG
CCTCAAAGGCCATGCATCATCGGCACTAAAACGCCTTCTAGCGACGTCCTCGTTTTTGAT
ATCACAAAACACCCAAACAAGCCTGACCCAAACGGCATCTGCAAGCCGGACATAAGGCTT
AAGGGACACCAAAAAGAAGGATATGGGCTGTCGTGGAACCCCAGCATGCCAGGTCATCTC
CTGAGTGCCTCTGATGATCACACCATCTGTCTCTGGGACGTGAGGGATAAACCGAAGGAT
GCACGTGAGCTCCTTGCTAAATCCGTATTTACAGGGCACACGGCTGTTGTGGAAGACGTG
TCGTGGCATTTGCTCCACGACAGTTTGTTCGGATCAGTGGCTGACGACCAAAAGCTTCTC
ATTTGGGACACAAGATGCCCAAACACAAATAAACCGAGTCACATAGTAGAGGCACACACA
GCCGAGGTTAACTGCTTATCTTTTAATCCGTTCAGTGAATTCATACTGGCGACTGGTTCT
GCTGATAAGACTGTTGCATTATGGGATTTGAGAAATCTCAAACTGAAATTGCATTCCTTC
GAATCTCACAAAGACGAGATATTCCAGGTGCAGTGGTCGCCTCATAATGAGACCATTCTC
GCATCAAGCGGCACCGACCGTCGTCTCAACGTGTGGGATCTCAGCAAGATTGGTGAGGAG
CAGTCAGCAGAAGACGCTGAGGATGGGCCTCCTGAACTACTGTTCATTCATGGTGGACAC
ACTGCTAAAATATCTGACTTTTCTTGGAACATCAATGAGCCGTGGGTGATATGTTCCGTG
TCAGAAGACAACATCATGCAAGTGTGGCAAATGGCTGAAAATATATACAATGATGAAGAG
CCAGATGCTCCCAATGCAGAACTGGAACAGACTTCTACCTGA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[10-430] 1.3E-164 |
| Pfam |
Histone-bd_RBBP4_N (IPR022052) - T[26-94] 2.5E-27 |
| SMART |
WD40_repeat (IPR001680) - T[121-160] 120.0 - T[173-213] 4.8E-6 - T[223-263] 0.044 - T[269-309] 1.1E-9 - T[313-353] 7.0E-7 - T[370-410] 0.011 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[127-416] 4.28E-51 |
| Pfam |
WD40_repeat (IPR001680) - T[180-213] 0.074 - T[271-309] 8.3E-7 - T[317-353] 3.5E-4 - T[374-409] 0.092 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[180-419] 33.485 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[180-215] 11.544 - T[230-265] 8.537 - T[276-312] 13.65 - T[320-362] 12.948 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[200-214] 1.5E-8 - T[296-310] 1.5E-8 - T[340-354] 1.5E-8 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[200-214] . - T[296-310] . - T[340-354] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| GRWD1_HUMAN | 28.041 % | 119 | 2.21E-29 |
| RBBP7_HUMAN | 83.135 % | 744 | 0 |
| RBBP4_HUMAN | 86.538 % | 761 | 0 |