Aniseed - Transcript Card

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S99.g02039.01.t

Possible name(s)

DKC1; TRUB1

Gene model

Haaura.CG.MTP2014.S99.g02039

Location

S99 [113,512 / 116,254]

Sequences

Amino acid sequence

Length: 407

>Haaura.CG.MTP2014.S99.g02039.01.p
QHNCYFHFFIILNSSQAIETLTGALFQRPPLISAVKRQLRVRTIYESKLLEFDSERNLGV
FWISCEAGTYVRTLCVHLGLLLGVGGQMQELRRVRSGIVSENAGLVTMHDVLDAQWLYEH
HKDESYLRRVISPLEKLLVSHKRIILKDSAVNAVCYGAKLMLPGLLRYEDGIEINEEIVA
ITTKGEAICLAIALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGLGPKAVMKKNMMKS
GLLGKFGKPNENTPKDWMTSYKDYSQPETSIPAVEKSLVISADAKIDLQEQVKKEQLATK
RKRPASESSSASSEAAVAVISKPPKVEPVTSDSETKLKKKKKKEKKEKKKLKKDKDALEK
STASSVADETLNTTAASTDASMLQSPESKKKKKEKKKKKKKDKEDE*

Nucleotide sequence

Length: 1,221

>Haaura.CG.MTP2014.S99.g02039.01.t
CAGCACAACTGCTATTTTCACTTTTTTATCATTTTAAACTCTTCACAGGCTATTGAAACA
CTTACCGGAGCATTGTTCCAGCGTCCTCCCTTAATTTCTGCTGTTAAAAGGCAGTTGCGT
GTGCGTACCATTTATGAAAGCAAGCTATTGGAATTTGATTCTGAAAGGAATTTAGGTGTG
TTCTGGATTAGCTGCGAAGCCGGTACTTACGTCAGAACGTTGTGCGTACATCTCGGTTTG
CTGCTTGGTGTCGGGGGTCAGATGCAAGAACTCAGACGAGTGCGTTCTGGAATCGTTTCA
GAAAATGCGGGTCTAGTTACAATGCATGATGTGCTGGATGCTCAATGGTTATATGAACAC
CACAAGGATGAGAGCTATCTCAGAAGGGTTATTAGTCCATTGGAGAAGTTGCTTGTTTCA
CATAAAAGAATAATCCTAAAAGACAGTGCTGTGAATGCCGTTTGCTACGGTGCTAAATTG
ATGCTGCCGGGACTTCTGAGATATGAAGATGGAATCGAGATCAACGAAGAAATTGTAGCG
ATAACAACCAAGGGTGAAGCAATATGTTTAGCTATTGCACTAATGACAACTGCGGTGATA
TCCACATGTGATCACGGAGTTGTAGCAAAGATTAAAAGAGTCATCATGGAACGGGACACT
TACCCCAGAAAATGGGGTTTGGGACCTAAGGCGGTGATGAAAAAAAATATGATGAAGTCG
GGCCTCCTAGGAAAGTTTGGAAAGCCTAATGAAAATACTCCAAAAGATTGGATGACCTCT
TACAAAGATTATTCTCAGCCAGAAACTTCGATACCGGCTGTTGAAAAATCATTGGTCATC
TCTGCCGATGCAAAAATAGATTTACAAGAGCAGGTGAAGAAAGAACAGCTCGCGACAAAG
CGTAAGCGTCCTGCTAGCGAAAGCTCTTCAGCTTCCTCCGAGGCAGCGGTTGCAGTCATA
TCTAAGCCTCCTAAAGTAGAACCAGTTACCTCGGATTCGGAAACTAAACTCAAGAAGAAA
AAGAAGAAAGAAAAAAAAGAAAAGAAGAAATTGAAAAAGGACAAAGATGCTTTAGAAAAA
TCAACAGCATCTTCAGTAGCTGATGAAACATTGAACACCACAGCTGCATCGACAGATGCT
AGTATGTTGCAGTCTCCTGAGAGTAAGAAGAAAAAGAAAGAGAAGAAGAAAAAAAAGAAA
AAGGACAAAGAAGATGAATGA

InterProScan

TIGRFAM	tRNA_PsdUridine_synth_B_fam (IPR004802) - T[15-226] 4.4E-103
PANTHER	tRNA_PsdUridine_synth_B_fam (IPR004802) - T[15-401] 3.5E-155
SUPERFAMILY	PsdUridine_synth_cat_dom_sf (IPR020103) - T[16-139] 2.62E-33
Pfam	TruB_C (IPR032819) - T[72-138] 1.5E-20
TIGRFAM	Uncharacterised_CHP00451 (IPR004521) - T[132-212] 2.9E-7
Gene3D	PUA_sf (IPR036974) - T[138-253] 1.1E-54
ProSiteProfiles	PUA (IPR002478) - T[141-216] 17.243
SUPERFAMILY	PUA-like_sf (IPR015947) - T[141-222] 6.63E-20
Pfam	PUA (IPR002478) - T[142-215] 2.7E-17
SMART	PUA (IPR002478) - T[142-216] 8.3E-19

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
DKC1_HUMAN	70.861 %	429	6.03E-148