- Transcript 'Harore.CG.MTP2014.S3...' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S1013.g13259.01.t
Possible name(s)
EED; LRWD1; TLR9
Gene model
Location
S1013 [25,781 / 27,704]
Amino acid sequence
Length: 640
>Phmamm.CG.MTP2014.S1013.g13259.01.p
MSKLEHWNGNLDEKYILAISGKENLGDIEELDLSHLSFEESDLHEDIFNKLTALIELDLS
HNKLTVVPQNINIPNLQYLDISQNCIQDIDWVQRFPKLIELDIEGNTSLTIDDNYKLTYL
LKDLQFIDGKRIDNREKFGNQYTQGLVLQMESLWQSLNFAELHETLNKELLVKEFTLKAK
EKVKHGPNSLKGYRLWRIDQLAPEFVLFKLECPVQKFLDIYVKSSECENMKRKIGSNDVT
TSPKLQKLSAPTPDVSYNVSAILQCHSGESGSQDFSTQVWCCEFEPNKDNPTATTNIVAT
CGGENVCLIDCDTTKVQAKFHQPNEEFFTLAWTTMILGRHSSNILAAGGCLGFIHLIHPD
QDICYGRIKIHSSPIQTMVFAPTGPTHLLSADRKSKIYLLDIDTPTVPDYKISWRKLISF
EGIQATPLKLLVPDSGFHLLCATEFGLYVWKTNGFTKNYGKVIKSVCEISFPFVSPDIRV
VDALAKISPGVIVSKCAQQGVIFLWDLLSLKNDISKAIQSRKAKVSVKILAELKWSVTKQ
CYLNLAFCEKQSQVVAGDEKGNIWLYKVENQLQNKIACCPVPESVTDPVNVIPFPSCTLN
GIKIPELRNGTIYNDVSVNSDGNYIVAAADSNLLLIYKNM
Nucleotide sequence
Length: 1,923
>Phmamm.CG.MTP2014.S1013.g13259.01.t
ATGTCTAAGCTTGAACACTGGAATGGAAATTTGGATGAAAAATATATTCTGGCAATAAGC
GGAAAAGAAAACCTTGGAGATATTGAGGAATTGGATCTGAGCCATTTAAGTTTTGAAGAA
TCAGATTTGCATGAGGACATTTTTAATAAGCTGACTGCATTGATTGAACTGGATTTATCA
CACAACAAACTTACAGTCGTGCCACAAAACATAAATATTCCTAATCTCCAGTATTTGGAT
ATTTCTCAAAACTGCATTCAAGACATTGACTGGGTTCAGCGCTTTCCAAAGTTAATTGAA
CTTGATATTGAGGGAAACACATCACTTACAATCGATGATAATTACAAACTTACATATCTC
CTCAAAGACCTTCAGTTTATTGATGGCAAACGAATTGACAATCGAGAAAAATTTGGAAAT
CAGTACACTCAGGGCCTTGTTCTTCAAATGGAAAGTCTGTGGCAATCCCTTAACTTTGCG
GAATTACATGAAACTTTAAACAAAGAGCTCTTGGTAAAAGAATTTACATTAAAAGCAAAA
GAAAAAGTGAAACATGGACCAAACTCATTGAAAGGTTATCGTCTCTGGAGAATTGATCAA
CTTGCTCCAGAATTTGTTTTATTCAAACTTGAATGCCCTGTGCAAAAATTTTTGGATATT
TATGTAAAATCTTCTGAGTGTGAGAACATGAAGCGTAAAATTGGTAGCAACGACGTAACA
ACAAGTCCCAAATTGCAAAAACTGTCTGCACCGACCCCAGATGTTTCGTATAATGTTTCA
GCCATCTTACAATGCCACAGTGGAGAGTCTGGGAGTCAAGATTTTTCGACACAAGTTTGG
TGTTGTGAATTTGAACCAAACAAAGACAACCCAACTGCAACGACAAACATTGTTGCCACT
TGTGGGGGTGAAAATGTATGTCTAATTGACTGCGATACTACTAAGGTCCAAGCTAAGTTC
CATCAACCCAACGAGGAGTTCTTTACTCTTGCTTGGACCACAATGATACTTGGCAGACAT
TCAAGTAATATTTTAGCAGCTGGCGGTTGTCTCGGCTTCATTCATCTCATTCACCCTGAC
CAAGATATTTGCTATGGCCGAATTAAAATCCATTCATCACCAATTCAGACGATGGTTTTT
GCACCAACGGGTCCAACACATTTATTGTCTGCTGATCGGAAAAGTAAAATATATCTTTTG
GATATTGACACACCAACTGTTCCAGATTATAAAATTTCATGGAGGAAATTAATCAGCTTC
GAAGGAATTCAAGCCACTCCATTAAAACTGCTGGTGCCAGATTCAGGTTTTCATTTACTT
TGTGCAACTGAATTCGGTTTGTACGTTTGGAAAACAAATGGTTTCACGAAAAACTATGGG
AAAGTAATTAAATCTGTTTGTGAAATAAGTTTTCCATTTGTAAGTCCCGATATTCGAGTT
GTTGATGCACTGGCAAAAATTTCCCCAGGTGTAATTGTTTCAAAATGTGCACAACAAGGT
GTAATATTCCTGTGGGATTTACTGTCTTTGAAAAATGACATTTCGAAAGCAATTCAGAGC
AGAAAAGCCAAAGTTTCTGTCAAAATCCTTGCTGAATTAAAGTGGTCAGTCACGAAACAA
TGTTATCTTAATTTGGCTTTCTGTGAAAAACAAAGTCAAGTTGTGGCCGGCGACGAAAAG
GGGAATATCTGGTTGTATAAGGTTGAGAATCAGCTACAAAATAAAATTGCCTGCTGTCCT
GTGCCAGAGTCGGTTACTGACCCAGTAAATGTGATACCTTTTCCTTCTTGTACATTAAAT
GGCATCAAAATACCTGAATTACGCAATGGTACAATCTACAATGATGTCAGTGTGAACTCA
GATGGAAATTATATTGTGGCAGCTGCAGACAGTAACCTGCTGTTGATCTACAAAAATATG
TGA
| Gene3D |
LRR_dom_sf (IPR032675) - T[7-145] 8.0E-20 |
| Pfam |
Leu-rich_rpt_4 (IPR025875) - T[52-89] 8.1E-8 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[53-74] 7.019 - T[75-96] 7.866 - T[97-118] 5.186 |
| SMART |
WD40_repeat (IPR001680) - T[256-310] 6.0 - T[361-401] 0.3 - T[526-567] 280.0 - T[600-638] 68.0 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[263-640] 1.4E-45 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[275-638] 1.28E-23 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRWD1_HUMAN | 30.934 % | 291 | 7.18E-90 |