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TRANSCRIPT CARD

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  1. Clone 'cilv024g13' > 
  2. EST 'FF743231.1' > 
  3. Transcript 'Phmamm.CG.MTP2014.S1...' > 
  4. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1027.g13339.01.t

Possible name(s)

AP3B2; AP3D1; COPB1

Gene model

Phmamm.CG.MTP2014.S1027.g13339

Location

S1027 [42,117 / 56,312]

Sequences

Amino acid sequence

Length: 916

>Phmamm.CG.MTP2014.S1027.g13339.01.p
MTSAESICYTLIYSPSVTDSEPVNEAKLKNDIEHGDIRIKTEALKKVILMTLNGEKLQGL
LMTIIKYLLPSDDHTVKKLLLIFWEIWPKTDQQGKLRPEMILVCDAYRKDLQHPNEFIRG
STLRFLCKLRQPELIEPLMPAIRTCLEHRHSYVRRNAVLAIYTIYRKFDQLIPDAPELIH
DFLEGEKDASCKRNAFMMLIHADQERALDYLSTCIDQVNTFNDILQLVIVELVYKVCNAN
PNERSRFIRCIYNLLQSTSQAVRYEAAGTLVTLSNAPTAIRAAAQCYIELIVKEADNNVK
LIVLDRLIDLKDHPLHEKVLQEMVMDILRALASPDLEVRRKTLDLALDLVTSRNVEDFVK
FMEKEITKSANIQGHDNTDKYRQMLVKRMHLCAVKFPDTAAMIIPVLMEFLGDSEELAAC
DVLLFVREAVHRYDAHKGLILDKLLEVFSTIRAAKIMRGVLWILGEYCDGTSRILKFVTE
VRKSVGDLPIVEHELKLAAGEADENQDSEEKTAQSAAARRVTEMGTYVTQSAFSVGSKSS
GGKGGDNTKRPPLRQFFMDGDFSLAGSLSTALTKQALRFMTNCNDPRKQNSFAAQCMLIL
SSVLHLGKSSLPKKPISDDEVDRLASCLKPDDPINFVQLLAKVEAGSLEDQFELSLNAAV
GTLSQKKEAKDPGASKLNKVTQLTGFSDPVYAEAYVHINQYDIVLDVLVVNQTADTLQNC
TIELATLGDLKLVEKPSPLTLAPHDFANIKASVKVASTENGIIFGNIVYDITGAGSDRNC
VVLNDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNITDLSEFLQHILSCTNMK
CLTPEKALGGDSGFLAANLFAKSIFGESGLANVSIEKPAGKGPNAPVAGHIRIRAKSQGM
ALSLGDKLNQSQKKKK

Nucleotide sequence

Length: 2,751

>Phmamm.CG.MTP2014.S1027.g13339.01.t
ATGACATCTGCTGAGAGTATTTGTTACACGCTGATCTACAGTCCATCCGTTACCGACTCT
GAGCCTGTTAACGAGGCAAAGTTGAAAAATGACATCGAGCATGGTGATATCAGAATCAAG
ACTGAAGCACTAAAGAAGGTCATACTTATGACCTTGAACGGGGAGAAGTTACAAGGTTTG
TTAATGACAATCATTAAATATCTTCTCCCATCCGATGATCACACAGTCAAGAAACTACTT
CTCATATTTTGGGAGATTTGGCCAAAAACTGACCAACAAGGAAAACTTAGACCTGAGATG
ATCTTGGTCTGTGATGCTTACAGAAAGGATTTGCAACATCCAAATGAGTTTATTCGTGGC
TCCACCCTCAGATTTCTATGTAAGCTTCGCCAGCCAGAGTTGATTGAACCGCTCATGCCG
GCGATCAGAACGTGTCTGGAACATCGCCACAGTTATGTAAGGAGAAACGCTGTTCTGGCA
ATCTACACCATTTACAGGAAATTTGACCAGCTGATTCCTGATGCTCCTGAGTTGATCCAT
GATTTCTTGGAGGGAGAGAAAGATGCTTCTTGCAAGAGAAATGCTTTCATGATGTTGATT
CACGCAGACCAGGAACGGGCTTTGGATTACCTTAGTACTTGTATTGACCAGGTGAACACC
TTCAATGACATCCTACAGCTTGTGATAGTGGAGCTGGTGTACAAAGTTTGCAATGCCAAT
CCTAACGAAAGATCTAGGTTTATCAGATGCATCTATAATCTGCTGCAATCTACAAGCCAA
GCTGTTCGATACGAAGCTGCCGGAACGCTTGTCACCTTATCCAATGCCCCAACTGCTATA
AGAGCTGCAGCACAGTGCTATATTGAGTTGATTGTTAAGGAGGCCGACAATAATGTGAAG
TTGATTGTTCTTGATCGATTGATTGACCTTAAAGATCATCCACTACATGAAAAAGTTTTG
CAGGAAATGGTGATGGATATTTTGAGAGCGCTCGCTTCACCTGACCTTGAAGTTCGGCGC
AAAACTCTCGACCTTGCACTTGACCTTGTAACCTCAAGAAATGTCGAAGATTTTGTGAAA
TTTATGGAGAAGGAGATCACCAAATCAGCAAATATCCAGGGTCACGACAACACTGACAAA
TACCGACAGATGTTGGTGAAACGGATGCATTTGTGTGCTGTTAAGTTCCCCGACACAGCT
GCGATGATCATTCCAGTGCTCATGGAGTTTTTGGGTGACAGCGAGGAATTGGCAGCTTGT
GACGTTTTGTTGTTCGTTCGTGAAGCTGTCCACAGATACGACGCACACAAGGGCCTCATT
CTAGACAAACTGTTGGAAGTGTTTTCAACCATTCGCGCTGCAAAGATAATGCGCGGTGTG
TTGTGGATTTTGGGTGAATACTGCGACGGAACTTCGAGGATTCTCAAATTTGTAACTGAA
GTTCGCAAGTCTGTGGGGGATCTCCCTATCGTGGAACACGAGCTGAAGTTGGCTGCCGGG
GAAGCTGACGAAAATCAGGATAGTGAGGAAAAGACAGCTCAGTCTGCAGCTGCTCGTCGT
GTTACTGAGATGGGAACTTACGTCACCCAATCAGCTTTCAGCGTTGGGAGTAAATCTTCC
GGAGGAAAAGGAGGCGATAACACAAAACGTCCACCTCTTCGTCAATTCTTCATGGATGGG
GACTTCTCACTTGCCGGTTCCCTTTCCACTGCTTTGACCAAACAAGCTCTCAGGTTCATG
ACAAACTGCAATGATCCACGAAAACAAAATTCATTTGCAGCACAGTGCATGCTCATTCTA
TCGAGCGTTCTACATCTTGGCAAATCTTCACTTCCCAAGAAACCAATCAGTGATGATGAG
GTCGACCGACTTGCCTCGTGCCTGAAGCCTGACGACCCGATCAACTTTGTCCAACTTCTG
GCGAAAGTTGAGGCTGGATCTCTCGAGGACCAGTTTGAGTTGAGTCTGAACGCTGCAGTG
GGAACTCTCAGTCAGAAGAAGGAAGCCAAAGATCCGGGTGCATCAAAACTTAACAAGGTT
ACACAACTGACAGGCTTCTCAGATCCAGTTTATGCTGAAGCTTATGTTCACATCAATCAG
TATGATATTGTATTGGATGTGTTGGTTGTCAATCAAACTGCTGATACTCTACAGAACTGC
ACTATTGAGCTTGCCACACTGGGCGACCTTAAGTTGGTTGAAAAGCCGAGTCCACTTACA
CTCGCCCCACACGACTTCGCGAACATCAAAGCAAGTGTAAAAGTCGCGTCAACAGAGAAT
GGAATTATATTCGGGAATATCGTCTATGACATCACAGGAGCGGGCAGCGATCGTAATTGT
GTCGTACTCAATGATATTCACATTGACATCATGGATTACATCCAACCTGCCACATGCACT
GATGCTGAATTCAGGCAAATGTGGGCGGAGTTTGAGTGGGAAAACAAAGTGACGGTGAAC
ACGAATATCACAGACCTTTCCGAATTCCTTCAACACATTCTCAGCTGCACTAACATGAAA
TGTTTGACACCAGAAAAGGCGCTAGGTGGCGACTCCGGGTTTCTTGCTGCAAATCTCTTT
GCGAAGTCAATCTTCGGTGAAAGTGGACTCGCCAACGTTAGCATTGAGAAACCTGCGGGC
AAAGGACCTAATGCTCCAGTGGCAGGCCACATAAGGATCAGAGCTAAGAGCCAGGGCATG
GCTCTCAGTCTGGGCGACAAACTCAATCAATCGCAAAAGAAAAAGAAATAA

InterProScan

PANTHER
COPB1 (IPR016460) - T[1-629] 0.0 - T[629-915] 0.0
PIRSF
COPB1 (IPR016460) - T[2-630] 1.8E-237 - T[628-916] 1.7E-130
Gene3D
ARM-like (IPR011989) - T[17-532] 7.7E-94
Pfam
Clathrin/coatomer_adapt-like_N (IPR002553) - T[24-502] 5.5E-111
SUPERFAMILY
ARM-type_fold (IPR016024) - T[26-484] 9.49E-77
Pfam
Coatomer_bsu_C (IPR011710) - T[630-771] 4.5E-59
Pfam
COPB1_appendage_platform_dom (IPR029446) - T[777-908] 2.9E-56

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
COPB_HUMAN 69.335 % 1367 0