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TRANSCRIPT CARD

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  1. Transcript 'Cisavi.CG.ENS81.R106...'
  2. Molecular Tool 'Ci-MRF-MO1640 (Meedel 2007)'
  3. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1046.g13424.01.t

Possible name(s)

AMY1A; AMY1B; AMY1C

Location

S1046 [46,606 / 53,299]

Sequences

Amino acid sequence

Length: 482

>Phmamm.CG.MTP2014.S1046.g13424.01.p
MVQRCNAVGVKIFADVIINHMCGAGGTGTGTGGTYFNADTEDFPGVPYSSADFNDANCTS
SSGNIEDYQDAAEVRNCRLYGLLDLNQGSDEVRGKMVNFMNDLISLGVAGFRMDASKHMW
PTDLEAIFKSLNKLPDGSTPFIYQEVIDEESENHVRNCRLYGLLDLNQGSDEVRGKMVNF
MNDLISLGVAGFRMDASKHMWPTDLEAIFKSLNKLPDGSTPFIYQEVIDQESEPVSASEY
YYLGRVTEFEYGYNLASNLNNIQVLQNFGEAWGMMPDMNALVFLNNHDNQRGHGAGGDVI
TFEDPYDLKIFTSYMMAWPYGVPRVMSSYYFSNSDQGPPPNQRSVNADGTCGNGWVCEHR
WRQIKNMAAFAAAAAGQPVTNWWSAIDQIAFSRGNKAFLAINKASATLRRSFQTGMPAGE
YCNVNSGDFVNNACTGSCVSIDGSGFASISIPPSSDPVVAIHVNAPCNCPSGDCSSNVVP
LS

Nucleotide sequence

Length: 1,449

>Phmamm.CG.MTP2014.S1046.g13424.01.t
ATGGTTCAGCGTTGCAATGCCGTTGGTGTGAAAATCTTTGCCGATGTTATAATCAACCAT
ATGTGCGGAGCTGGCGGAACTGGCACTGGAACTGGCGGAACATATTTCAATGCGGACACT
GAAGACTTTCCTGGAGTTCCATATTCCAGTGCAGATTTTAATGACGCAAATTGTACATCT
TCTTCTGGCAACATCGAGGACTACCAAGATGCCGCAGAAGTACGAAACTGTCGACTTTAT
GGCCTTCTTGATCTCAATCAAGGATCAGATGAAGTGAGAGGCAAGATGGTAAACTTCATG
AACGACCTCATTTCGTTGGGTGTAGCCGGTTTCCGAATGGATGCATCCAAACACATGTGG
CCTACCGACCTTGAAGCAATCTTTAAGTCACTCAATAAACTTCCAGATGGCTCAACACCA
TTTATTTACCAGGAGGTCATTGATGAAGAAAGTGAGAATCACGTACGAAACTGTCGACTT
TATGGCCTTCTTGATCTCAATCAAGGATCAGATGAAGTGAGAGGCAAGATGGTAAACTTC
ATGAACGACCTCATCTCGTTGGGTGTAGCCGGTTTCCGAATGGATGCATCCAAACACATG
TGGCCTACCGACCTTGAAGCAATCTTTAAGTCACTCAATAAACTTCCAGATGGCTCAACA
CCATTTATTTACCAGGAGGTCATTGATCAAGAGAGCGAACCAGTGTCCGCATCCGAATAT
TACTATCTCGGAAGAGTAACAGAGTTCGAGTACGGATATAATTTGGCCAGCAACCTTAAC
AACATTCAGGTTTTGCAAAACTTCGGCGAGGCTTGGGGTATGATGCCTGATATGAACGCC
CTTGTCTTCCTCAATAACCATGACAACCAGAGAGGACATGGCGCAGGAGGAGATGTTATC
ACCTTCGAAGATCCATACGACCTTAAGATCTTTACTTCTTACATGATGGCTTGGCCGTAT
GGAGTTCCTAGAGTGATGTCCAGCTATTACTTCAGCAACTCGGATCAAGGTCCACCGCCA
AACCAGCGAAGTGTAAATGCTGATGGAACTTGTGGCAATGGATGGGTTTGCGAACACAGA
TGGAGACAAATCAAGAACATGGCTGCATTTGCTGCCGCTGCTGCAGGGCAACCTGTAACC
AATTGGTGGAGCGCAATAGACCAGATTGCATTTTCCCGCGGCAACAAGGCTTTCCTCGCC
ATCAACAAGGCTTCGGCAACGTTGAGACGATCTTTCCAGACCGGAATGCCAGCTGGAGAA
TATTGCAATGTTAACTCTGGCGATTTTGTCAACAATGCTTGCACAGGTTCTTGTGTTAGC
ATCGATGGATCAGGCTTCGCATCAATAAGCATTCCACCATCATCTGATCCTGTCGTGGCC
ATTCACGTTAACGCTCCTTGCAACTGCCCGAGCGGAGATTGCTCGTCCAATGTTGTACCA
CTTAGCTAA

InterProScan

SUPERFAMILY
Glycoside_hydrolase_SF (IPR017853) - T[1-149] 5.28E-39 - T[152-370] 8.19E-48
Pfam
Glyco_hydro_13_cat_dom (IPR006047) - T[1-120] 3.2E-8 - T[148-295] 2.0E-6
SMART
Glyco_hydro_13_cat_dom (IPR006047) - T[1-371] 1.6E-16
PRINTS
Alpha_amylase (IPR006046) - T[9-20] 1.1E-9 - T[108-119] 1.1E-9 - T[141-159] 1.1E-9
Gene3D
Glyco_hydro_b (IPR013780) - T[377-466] 3.7E-29
SMART
A-amylase_C (IPR031319) - T[380-466] 5.9E-35
Pfam
A-amylase/branching_C (IPR006048) - T[387-455] 5.2E-10

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
AMYP_HUMAN 48.673 % 312 2.75E-101
AMY1_HUMAN 47.297 % 320 3.95E-104
AMY2B_HUMAN 49.263 % 316 1.18E-102