- Molecular Tool 'Ci-MRF-MO1640 (Meedel 2007)' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S1046.g13424.01.t
Possible name(s)
AMY1A; AMY1B; AMY1C
Gene model
Location
S1046 [46,606 / 53,299]
Amino acid sequence
Length: 482
>Phmamm.CG.MTP2014.S1046.g13424.01.p
MVQRCNAVGVKIFADVIINHMCGAGGTGTGTGGTYFNADTEDFPGVPYSSADFNDANCTS
SSGNIEDYQDAAEVRNCRLYGLLDLNQGSDEVRGKMVNFMNDLISLGVAGFRMDASKHMW
PTDLEAIFKSLNKLPDGSTPFIYQEVIDEESENHVRNCRLYGLLDLNQGSDEVRGKMVNF
MNDLISLGVAGFRMDASKHMWPTDLEAIFKSLNKLPDGSTPFIYQEVIDQESEPVSASEY
YYLGRVTEFEYGYNLASNLNNIQVLQNFGEAWGMMPDMNALVFLNNHDNQRGHGAGGDVI
TFEDPYDLKIFTSYMMAWPYGVPRVMSSYYFSNSDQGPPPNQRSVNADGTCGNGWVCEHR
WRQIKNMAAFAAAAAGQPVTNWWSAIDQIAFSRGNKAFLAINKASATLRRSFQTGMPAGE
YCNVNSGDFVNNACTGSCVSIDGSGFASISIPPSSDPVVAIHVNAPCNCPSGDCSSNVVP
LS
Nucleotide sequence
Length: 1,449
>Phmamm.CG.MTP2014.S1046.g13424.01.t
ATGGTTCAGCGTTGCAATGCCGTTGGTGTGAAAATCTTTGCCGATGTTATAATCAACCAT
ATGTGCGGAGCTGGCGGAACTGGCACTGGAACTGGCGGAACATATTTCAATGCGGACACT
GAAGACTTTCCTGGAGTTCCATATTCCAGTGCAGATTTTAATGACGCAAATTGTACATCT
TCTTCTGGCAACATCGAGGACTACCAAGATGCCGCAGAAGTACGAAACTGTCGACTTTAT
GGCCTTCTTGATCTCAATCAAGGATCAGATGAAGTGAGAGGCAAGATGGTAAACTTCATG
AACGACCTCATTTCGTTGGGTGTAGCCGGTTTCCGAATGGATGCATCCAAACACATGTGG
CCTACCGACCTTGAAGCAATCTTTAAGTCACTCAATAAACTTCCAGATGGCTCAACACCA
TTTATTTACCAGGAGGTCATTGATGAAGAAAGTGAGAATCACGTACGAAACTGTCGACTT
TATGGCCTTCTTGATCTCAATCAAGGATCAGATGAAGTGAGAGGCAAGATGGTAAACTTC
ATGAACGACCTCATCTCGTTGGGTGTAGCCGGTTTCCGAATGGATGCATCCAAACACATG
TGGCCTACCGACCTTGAAGCAATCTTTAAGTCACTCAATAAACTTCCAGATGGCTCAACA
CCATTTATTTACCAGGAGGTCATTGATCAAGAGAGCGAACCAGTGTCCGCATCCGAATAT
TACTATCTCGGAAGAGTAACAGAGTTCGAGTACGGATATAATTTGGCCAGCAACCTTAAC
AACATTCAGGTTTTGCAAAACTTCGGCGAGGCTTGGGGTATGATGCCTGATATGAACGCC
CTTGTCTTCCTCAATAACCATGACAACCAGAGAGGACATGGCGCAGGAGGAGATGTTATC
ACCTTCGAAGATCCATACGACCTTAAGATCTTTACTTCTTACATGATGGCTTGGCCGTAT
GGAGTTCCTAGAGTGATGTCCAGCTATTACTTCAGCAACTCGGATCAAGGTCCACCGCCA
AACCAGCGAAGTGTAAATGCTGATGGAACTTGTGGCAATGGATGGGTTTGCGAACACAGA
TGGAGACAAATCAAGAACATGGCTGCATTTGCTGCCGCTGCTGCAGGGCAACCTGTAACC
AATTGGTGGAGCGCAATAGACCAGATTGCATTTTCCCGCGGCAACAAGGCTTTCCTCGCC
ATCAACAAGGCTTCGGCAACGTTGAGACGATCTTTCCAGACCGGAATGCCAGCTGGAGAA
TATTGCAATGTTAACTCTGGCGATTTTGTCAACAATGCTTGCACAGGTTCTTGTGTTAGC
ATCGATGGATCAGGCTTCGCATCAATAAGCATTCCACCATCATCTGATCCTGTCGTGGCC
ATTCACGTTAACGCTCCTTGCAACTGCCCGAGCGGAGATTGCTCGTCCAATGTTGTACCA
CTTAGCTAA
| SUPERFAMILY |
Glycoside_hydrolase_SF (IPR017853) - T[1-149] 5.28E-39 - T[152-370] 8.19E-48 |
| Pfam |
Glyco_hydro_13_cat_dom (IPR006047) - T[1-120] 3.2E-8 - T[148-295] 2.0E-6 |
| SMART |
Glyco_hydro_13_cat_dom (IPR006047) - T[1-371] 1.6E-16 |
| PRINTS |
Alpha_amylase (IPR006046) - T[9-20] 1.1E-9 - T[108-119] 1.1E-9 - T[141-159] 1.1E-9 |
| Gene3D |
Glyco_hydro_b (IPR013780) - T[377-466] 3.7E-29 |
| SMART |
A-amylase_C (IPR031319) - T[380-466] 5.9E-35 |
| Pfam |
A-amylase/branching_C (IPR006048) - T[387-455] 5.2E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| AMYP_HUMAN | 48.673 % | 312 | 2.75E-101 |
| AMY1_HUMAN | 47.297 % | 320 | 3.95E-104 |
| AMY2B_HUMAN | 49.263 % | 316 | 1.18E-102 |