Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'KH2012:KH.C1.144.v5....' > 
  2. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1063.g13498.01.t

Possible name(s)

GAPVD1; RABGEF1; RIN2

Gene model

Phmamm.CG.MTP2014.S1063.g13498

Location

S1063 [32,000 / 37,988]

Sequences

Amino acid sequence

Length: 372

>Phmamm.CG.MTP2014.S1063.g13498.01.p
MTLTLHFIKQEATIDEQSVMIQDFYQAMIDRLISHPVFKQYTNEVEQEGIMDNIEKFLMT
RLYRNVFCNDQTDDEIEDLKVQTRIRNLHWITASMLDANIDENCPSVTECTDKAITAIIE
MDSKRAPQDKLACITRCSKNIFEAIKNTKADGSAASADEFLPALIYIILKANPPLLKSNI
RYVTRFANPARVMSGEDAYYFTNLCCAVSFIENAENGLNASSLSLSQEQFDAYMNGEIPS
NTQEVDGQEKKMCPGLRLMYQNLNDLASLHERTDRLFEEATEMRQGIERHSERIKSEVNK
ALIHKIPDLDYPLCSDGSMTDGSSTSSSYNDHRDIDAFAGPNQVNQHTALDDDITHTEHL
PAPLLPTVISHE

Nucleotide sequence

Length: 1,436

>Phmamm.CG.MTP2014.S1063.g13498.01.t
GCCGGTTCTATCATGAAAGTAATATTTTTCAGCCGGTTTTGTTACAAAAAATCCATTGAC
AGTAACCAGTAATGCTAATCAGTTCGCTGATCTCATAAAATTTCCTGAGACGGGTCTATA
GAACCGGTGCGAACTGGCTGAATCCCACCACTACATGACACTAACCTTGCATTTTATCAA
GCAGGAGGCTACAATTGACGAGCAGTCAGTGATGATACAAGACTTTTATCAAGCGATGAT
TGATCGTCTTATCTCGCATCCAGTGTTTAAGCAATACACGAATGAAGTGGAACAAGAAGG
GATAATGGACAATATTGAAAAGTTTCTTATGACTCGACTTTATCGAAATGTTTTCTGCAA
CGATCAAACTGATGATGAGATTGAAGACCTTAAAGTTCAGACTCGCATTAGAAACCTCCA
CTGGATTACAGCATCAATGCTGGATGCTAACATTGATGAAAACTGTCCAAGTGTTACTGA
GTGTACAGACAAAGCTATAACAGCAATTATTGAAATGGATTCGAAACGAGCTCCACAAGA
TAAACTTGCTTGTATTACCCGATGCAGCAAGAATATATTCGAAGCAATTAAGAATACAAA
GGCTGATGGTTCAGCTGCGAGTGCTGATGAGTTTCTTCCTGCACTGATTTACATAATACT
GAAAGCCAACCCACCCCTGTTGAAGTCCAACATTCGATATGTGACCAGGTTTGCTAATCC
TGCGCGTGTCATGTCAGGAGAAGATGCGTACTACTTCACTAACCTGTGTTGCGCTGTTTC
TTTCATTGAAAACGCCGAGAACGGTTTGAACGCTTCAAGTTTGTCGCTAAGCCAGGAGCA
ATTCGACGCGTACATGAACGGGGAGATCCCCTCCAATACACAGGAAGTGGACGGACAGGA
AAAGAAAATGTGCCCGGGATTAAGACTCATGTATCAGAACCTTAACGATCTGGCTTCACT
GCATGAAAGAACCGACCGGTTGTTCGAGGAGGCGACGGAAATGCGACAAGGCATTGAGCG
TCATTCAGAAAGAATTAAATCCGAAGTCAACAAAGCTCTCATCCACAAAATCCCCGATCT
GGACTATCCACTTTGCAGTGATGGATCGATGACCGACGGCTCATCCACTTCATCGTCTTA
TAACGACCACAGGGACATTGACGCGTTTGCTGGGCCCAACCAAGTGAACCAGCATACCGC
ATTAGACGACGATATCACACACACTGAACATTTGCCCGCCCCTCTGCTACCGACTGTGAT
ATCGCATGAGTAGGATTTTTGCTCGCTAGTGGGTGCTAGATGGAACGTAAAGTGGAATTT
GATGCGTGCGCTGGTGAAACAAAACACGTTTGCTCATAGAAGAAGACTTACCGTGCCGTA
TAGGTGACAATTTTGACTCCACAATGATTTCTTCCATGTTGGCCTTTGTCCTAACA

InterProScan

SUPERFAMILY
VPS9_dom_sf (IPR037191) - T[10-235] 6.41E-62
Gene3D
VPS9_dom_sf (IPR037191) - T[71-246] 6.6E-62
ProSiteProfiles
VPS9 (IPR003123) - T[75-220] 37.116
SMART
VPS9 (IPR003123) - T[110-232] 5.6E-20
Pfam
VPS9 (IPR003123) - T[113-215] 7.5E-28

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
GAPD1_HUMAN 26.794 % 85.9 4.61E-18
RABX5_HUMAN 41.294 % 285 2.55E-90