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TRANSCRIPT CARD

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  1. Transcript 'Cisavi.CG.ENS81.R41....' > 
  2. Molecular Tool 'cilv15k10-MO' > 
  3. Transcript 'KH2012:KH.C3.141.v2....' > 
  4. Transcript 'KH2012:KH.C1.1152.v1...' > 
  5. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1063.g13498.02.t

Possible name(s)

GAPVD1; RABGEF1; RIN2

Gene model

Phmamm.CG.MTP2014.S1063.g13498

Location

S1063 [32,163 / 37,753]

Sequences

Amino acid sequence

Length: 345

>Phmamm.CG.MTP2014.S1063.g13498.02.p
MIDRLISHPVFKQYTNEVEQEGIMDNIEKFLMTRLYRNVFCNDQTDDEIEDLKVQTRIRN
LHWITASMLDANIDENCPSVTECTDKAITAIIEMDSKRAPQDKLACITRCSKNIFEAIKN
TKADGSAASADEFLPALIYIILKANPPLLKSNIRYVTRFANPARVMSGEDAYYFTNLCCA
VSFIENAENGLNASSLSLSQEQFDAYMNGEIPSNTQEVDGQEKKMCPGLRLMYQNLNDLA
SLHERTDRLFEEATEMRQGIERHSERIKSEVNKALIHKIPDLDYPLCSDGSMTDGSSTSS
SYNDHRDIDAFAGPNQVNQHTALDDDITHTEHLPAPLLPTVISHE

Nucleotide sequence

Length: 1,038

>Phmamm.CG.MTP2014.S1063.g13498.02.t
ATGATTGATCGTCTTATCTCGCATCCAGTGTTTAAGCAATACACGAATGAAGTGGAACAA
GAAGGGATAATGGACAATATTGAAAAGTTTCTTATGACTCGACTTTATCGAAATGTTTTC
TGCAACGATCAAACTGATGATGAGATTGAAGACCTTAAAGTTCAGACTCGCATTAGAAAC
CTCCACTGGATTACAGCATCAATGCTGGATGCTAACATTGATGAAAACTGTCCAAGTGTT
ACTGAGTGTACAGACAAAGCTATAACAGCAATTATTGAAATGGATTCGAAACGAGCTCCA
CAAGATAAACTTGCTTGTATTACCCGATGCAGCAAGAATATATTCGAAGCAATTAAGAAT
ACAAAGGCTGATGGTTCAGCTGCGAGTGCTGATGAGTTTCTTCCTGCACTGATTTACATA
ATACTGAAAGCCAACCCACCCCTGTTGAAGTCCAACATTCGATATGTGACCAGGTTTGCT
AATCCTGCGCGTGTCATGTCAGGAGAAGATGCGTACTACTTCACTAACCTGTGTTGCGCT
GTTTCTTTCATTGAAAACGCCGAGAACGGTTTGAACGCTTCAAGTTTGTCGCTAAGCCAG
GAGCAATTCGACGCGTACATGAACGGGGAGATCCCCTCCAATACACAGGAAGTGGACGGA
CAGGAAAAGAAAATGTGCCCGGGATTAAGACTCATGTATCAGAACCTTAACGATCTGGCT
TCACTGCATGAAAGAACCGACCGGTTGTTCGAGGAGGCGACGGAAATGCGACAAGGCATT
GAGCGTCATTCAGAAAGAATTAAATCCGAAGTCAACAAAGCTCTCATCCACAAAATCCCC
GATCTGGACTATCCACTTTGCAGTGATGGATCGATGACCGACGGCTCATCCACTTCATCG
TCTTATAACGACCACAGGGACATTGACGCGTTTGCTGGGCCCAACCAAGTGAACCAGCAT
ACCGCATTAGACGACGATATCACACACACTGAACATTTGCCCGCCCCTCTGCTACCGACT
GTGATATCGCATGAGTAG

InterProScan

SUPERFAMILY
VPS9_dom_sf (IPR037191) - T[8-208] 4.58E-57
Gene3D
VPS9_dom_sf (IPR037191) - T[44-219] 5.4E-62
ProSiteProfiles
VPS9 (IPR003123) - T[48-193] 37.116
SMART
VPS9 (IPR003123) - T[83-205] 5.6E-20
Pfam
VPS9 (IPR003123) - T[86-188] 6.5E-28

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RABX5_HUMAN 47.368 % 283 5.89E-90