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  1. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1086.g13609.02.t

Possible name(s)

RAPGEF1

Gene model

Phmamm.CG.MTP2014.S1086.g13609

Location

S1086 [29,117 / 39,224]

Sequences

Amino acid sequence

Length: 981

>Phmamm.CG.MTP2014.S1086.g13609.02.p
MSENIPQKRESLGANDGGTKVTKKLKGAKQRITESFSKPNHLKEIYLEKYRQYRKTGKGS
RQRHRHDKIKPSPSGSQEDLTRPDGCLKHKDTDENKLHDLCKEVKVGLMYFEAIIAKKRV
EQFSGSASQVLEVVINILDQLARIQYAPELSTVLMSCRSNVIQKVADLIHWSDKMLLESK
EEQENNFKAAPQIIGFVQKGVDELVNEAVNKIRARNSAPTTPTNRAVSSMSGFNHIGADS
EYSQLPSGDDIRRVPPIPPKKRSSMPKPVGIVAPFNASQDAAANVLGVQGLTRSEESLLG
HHDFYQLQGQFSSHIYESGDRTSFCSSNMSTDTSDSIDALANGEASNIAQNILRWHNIEQ
PNNTGDYEELLSRITTDSNSSDQKLSVPGSPIKDRPTSCPNAYIPIRLNLSNGASGWCAS
DSSFASIDDWQSPRHARSTSCLLDSPLRPNSNGSWQEDTMSQQSLNDSDNNIPPTLPVKK
NKKPFSRHDLSESTETLTDDEEVPPLPVKKNKIDLYMQFVHSSQAQPPPMSDISRETARR
YNQRDSLVSSPGARRYASQRQSIDSPVTGQRFEDSISQTSAQFSRVLSLKSNVSTVSSED
DQSSLPSTQPSPQNTRHSGVSSGYWTPLHASETSLSSLQEQQDQVQSAQTLPVLPETPPS
LPPKKTRLSVRRCNSLSSPHSGSSTETTATPLTAKENSRYRVNDDQVSHVFTFPPVSNDE
SHVTRQPPPLLPKRSSLGVRRTSAQNHNQRQRSWNGGTSPPPLPSHASVDVVDSTVHVNT
WQFAQQGPVTLPESHSAPPLPRKTTARVSPTVHINGTALSRDSGHVSVTSETEASFPVDL
SPDHTAQSAETEPDKEPSPQNGDNHTNGKDVKSKEQQEEEEGQSSPKSRRGQSTDRGCSL
PPDDPGNLLDMIDVSSYLSVHRHSEQSLPEVCSACVDALIVYAAELNKKSLIYYEAFLTT
YRSFITPLELLKKLLYRYPLH

Nucleotide sequence

Length: 2,946

>Phmamm.CG.MTP2014.S1086.g13609.02.t
ATGTCAGAAAATATTCCACAAAAAAGGGAGTCATTAGGTGCAAATGATGGAGGGACAAAG
GTTACGAAGAAACTTAAGGGGGCAAAACAAAGGATCACAGAGTCATTTAGCAAGCCAAAT
CACCTGAAAGAAATTTATCTAGAAAAGTATCGACAATACAGAAAGACAGGAAAAGGATCT
CGGCAGCGGCATCGTCATGACAAAATAAAGCCATCTCCCTCAGGCAGCCAAGAAGACCTA
ACCAGGCCTGATGGATGTTTAAAACATAAGGACACCGATGAAAACAAGCTTCATGATCTG
TGCAAGGAAGTAAAAGTGGGACTGATGTACTTTGAAGCAATTATTGCCAAAAAGCGAGTG
GAACAGTTTTCTGGTTCTGCCTCTCAAGTCTTGGAAGTTGTAATCAACATATTGGATCAA
CTTGCCAGGATACAATATGCTCCAGAGTTAAGTACGGTGCTTATGTCCTGTCGAAGCAAT
GTAATACAGAAAGTAGCAGATCTGATACATTGGTCAGACAAAATGCTGCTGGAATCAAAA
GAGGAACAGGAAAACAACTTTAAGGCAGCCCCTCAAATCATTGGTTTTGTGCAAAAGGGC
GTTGATGAACTGGTCAATGAGGCTGTTAACAAAATACGAGCACGTAACAGTGCACCAACC
ACACCAACAAATAGAGCAGTGAGCAGCATGTCTGGGTTTAACCACATTGGAGCTGATTCT
GAATATTCCCAGCTGCCATCAGGTGATGATATTCGAAGGGTGCCCCCTATACCTCCTAAA
AAGCGGTCTAGCATGCCAAAACCTGTGGGCATTGTTGCACCTTTCAACGCTTCCCAAGAT
GCAGCAGCAAATGTCCTGGGAGTACAAGGTCTTACTCGGTCAGAGGAATCACTCCTTGGC
CACCACGATTTTTACCAACTTCAGGGACAATTTTCCTCTCATATCTATGAGTCTGGGGAC
AGAACAAGTTTTTGTTCCAGCAACATGAGTACAGACACTTCTGATAGTATTGATGCACTT
GCTAATGGTGAAGCATCCAACATTGCACAAAACATACTGCGCTGGCACAACATTGAGCAA
CCTAACAATACTGGGGATTATGAAGAACTACTTTCTCGTATCACAACAGACAGCAACAGC
TCTGATCAAAAGTTATCTGTCCCTGGTTCTCCGATAAAAGATCGACCCACCTCTTGCCCT
AATGCCTATATTCCAATTAGACTAAACCTTTCCAATGGTGCATCTGGATGGTGTGCAAGT
GATAGTAGCTTTGCAAGTATTGATGACTGGCAATCACCGCGCCATGCAAGGTCAACCAGT
TGCCTGCTTGACAGTCCACTTCGTCCAAATTCAAATGGGTCATGGCAAGAAGACACAATG
TCACAACAATCACTAAATGACAGTGACAATAACATACCACCAACATTACCTGTTAAAAAG
AACAAAAAGCCATTTTCACGACATGACTTGTCAGAATCCACAGAAACCTTAACTGATGAT
GAGGAAGTTCCACCTTTGCCTGTGAAAAAGAACAAAATCGACCTCTACATGCAATTCGTA
CACAGCAGCCAGGCGCAACCGCCGCCTATGTCGGATATATCGCGGGAGACCGCTCGTCGT
TACAACCAGCGTGATTCACTCGTTTCCTCGCCGGGTGCTCGTCGTTACGCGAGCCAGAGA
CAATCCATTGACAGCCCGGTTACAGGTCAGCGATTCGAAGACAGTATTTCGCAAACCTCT
GCCCAATTCAGCCGGGTCCTTAGCCTCAAATCTAACGTATCCACTGTTTCGTCTGAAGAT
GACCAGTCCTCACTGCCCTCAACACAGCCGTCTCCTCAAAACACTCGCCACTCTGGAGTA
TCGTCCGGTTACTGGACTCCCCTTCACGCTTCAGAAACCAGTTTGTCCTCTCTACAGGAA
CAACAAGATCAAGTGCAATCAGCTCAAACCCTACCCGTCCTTCCTGAAACTCCACCGAGT
TTGCCCCCAAAGAAAACTCGTCTGTCCGTCCGCCGTTGCAACTCCCTGTCCTCCCCACAC
TCCGGCTCCTCAACGGAAACAACCGCCACTCCGCTCACAGCAAAGGAAAACTCTCGATAC
AGGGTCAACGATGATCAAGTTTCTCACGTTTTCACCTTTCCTCCCGTCTCAAATGACGAG
TCGCATGTCACGCGGCAGCCCCCGCCTCTCTTGCCAAAACGAAGCAGCCTCGGTGTTCGG
CGGACATCCGCACAAAACCACAACCAGCGTCAGCGGTCCTGGAACGGAGGGACTTCCCCT
CCGCCGTTGCCAAGTCACGCATCTGTTGACGTTGTGGACTCGACAGTACATGTCAACACC
TGGCAGTTTGCCCAGCAAGGCCCTGTGACACTACCGGAATCGCATTCGGCGCCGCCACTG
CCAAGAAAAACAACAGCCCGCGTTTCGCCCACGGTCCATATTAACGGTACTGCGTTATCG
CGTGACTCCGGGCACGTTTCTGTGACATCTGAAACAGAAGCGAGTTTTCCTGTTGACCTC
AGCCCCGACCACACTGCCCAAAGCGCGGAGACGGAACCAGATAAAGAACCCAGCCCACAG
AACGGCGACAACCACACAAACGGTAAGGATGTAAAAAGCAAAGAACAACAAGAGGAAGAA
GAAGGGCAGTCTTCACCGAAAAGTCGACGCGGCCAGTCCACAGATCGGGGTTGTTCGTTG
CCTCCCGATGACCCTGGTAACCTTCTTGACATGATTGACGTGTCAAGTTATCTCAGCGTT
CATCGTCACAGCGAGCAATCACTTCCAGAAGTTTGCTCGGCCTGCGTGGATGCTTTGATC
GTCTACGCTGCCGAATTGAACAAAAAGAGTTTGATATACTACGAGGCGTTTCTCACCACA
TACAGATCATTTATCACTCCCCTGGAACTACTGAAGAAACTACTTTATCGATATCCTTTG
CATTAG

InterProScan

SUPERFAMILY
Ras_GEF_dom_sf (IPR023578) - T[911-981] 1.12E-10
ProSiteProfiles
Ras-like_Gua-exchang_fac_N (IPR000651) - T[927-981] 17.056
Pfam
Ras-like_Gua-exchang_fac_N (IPR000651) - T[933-978] 2.3E-8
CDD
Ras-like_Gua-exchang_fac_N (IPR000651) - T[936-978] 5.40194E-10

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value