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  1. Molecular Tool 'FGF8/17/18>Eph3ΔC (Stolfi 2011)'
  2. Transcript 'KH2012:KH.C12.191.v4...'
  3. Transcript 'KH2012:KH.C2.150.v2....'
  4. Transcript 'Phmamm.CG.MTP2014.S3...'
  5. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1088.g13620.01.t

Possible name(s)

ZBTB17; ZNF236; ZNF398

Location

S1088 [37,718 / 41,361]

Sequences

Amino acid sequence

Length: 337

>Phmamm.CG.MTP2014.S1088.g13620.01.p
DKNNSPPKTSTNKNPDSLQVQSVYSMSPKLPNNQSPTVASSKKTKSLQSAKVVLGSKTNS
LSNNYNGDVDIAATATTIVTSDCETLNPSVYTCKDCCKYFTNVTEAVNHYYSEHPVSSTP
VKPVSSRPTHAPDRNSHSCPHCGRLFNNKNNLKRHILIKHTTDKRFKCSICGRRYAIRQS
LQYHMRSIHGKETEVEKPSVTSPTISSSNPTLQYEGIGHLITSSTDQSELNMHPAKKSPA
HEKRLSKLSTADDFSAITSTTSYMADASMLENVDKSELQPSVSGEDLPSIQRIESIQNNS
SQNITSKLGVENETNVIGSESRLVKVSFAQTCSNFWF

Nucleotide sequence

Length: 1,717

>Phmamm.CG.MTP2014.S1088.g13620.01.t
GTGACAAGAACAATTCACCGCCCAAAACTTCGACCAACAAGAATCCCGACTCACTTCAGG
TTCAATCTGTCTATTCCATGTCCCCTAAATTACCAAATAACCAATCACCCACTGTGGCGT
CTAGCAAAAAGACTAAATCGCTCCAATCAGCGAAAGTTGTTTTAGGGAGTAAAACAAATA
GTTTGTCCAACAATTACAATGGGGATGTTGATATAGCTGCAACTGCAACAACTATTGTAA
CATCTGATTGTGAAACACTAAATCCATCAGTCTACACATGCAAAGATTGCTGTAAATACT
TTACGAATGTAACAGAGGCAGTTAATCACTACTATTCAGAACACCCAGTTAGCTCTACAC
CAGTGAAACCAGTTAGTAGCAGACCAACTCATGCTCCTGACAGAAACAGCCACAGTTGTC
CTCATTGTGGCAGATTGTTCAACAACAAGAACAATCTCAAGCGGCACATACTTATCAAGC
ACACAACTGATAAGCGGTTTAAATGTAGTATTTGTGGGCGAAGGTACGCAATTCGGCAGT
CCTTACAGTACCATATGAGATCCATACATGGCAAAGAAACAGAAGTTGAAAAACCATCAG
TTACATCCCCCACAATTTCTTCATCAAACCCCACATTGCAGTATGAGGGCATTGGTCATT
TGATTACTTCCTCAACAGATCAATCTGAATTAAACATGCACCCTGCGAAGAAATCACCAG
CTCATGAAAAACGTTTAAGCAAACTTAGTACTGCAGATGACTTCAGTGCAATAACTTCCA
CCACATCATACATGGCAGATGCTTCAATGCTAGAAAATGTTGACAAAAGTGAATTGCAAC
CCTCTGTGAGCGGCGAAGATCTACCATCAATCCAAAGAATTGAAAGTATTCAAAACAACA
GCTCCCAAAACATAACCAGCAAGTTGGGTGTGGAAAATGAAACTAATGTTATTGGATCCG
AATCAAGATTGGTAAAGGTTAGTTTTGCACAAACTTGTTCAAACTTTTGGTTTTAACACA
GTACTTTTTTGTCAGTTGCTCGTCTTATCTTTTTTCAGGCTGAGCCCCATGCCACAATCC
CTTCCAGCTTACACGCAAAAGATTCAACTGCCTTTCCGGGTAAAGTAATATAAAGCACAC
ATGATTTGTGGTTCTAACCAGATTGATGTTGTAGGGTGTGTGAATGCAGTTACAAGTCTT
TCCAGTCCAGATCAAAATTGTGGTGGTGTGATGTTGCCACAAACAGTAGCAAGCATAGAA
CAAGTTGATTTGTCTGTTGAGTCTTTATCTGTACCTGCAGGTGGAAACCCGTTCGTATTG
TCTGGAACATCTCAATTGCCTGCTCTTTTGCCTGTATTTAGTGGAGAGTTTCGAAGAACC
TCAAACAATGATTTACCAATGTCTCAAAGTAGAGTTGGCTCACGTTTGCACCGTTGTGAC
ACATGCGACCGTGCATTTTCCACTATCCAGGCATATACAAGACATCGAAGATCTTGCAAT
AAGCATGAGTGTCCTATTTGTCATCGCGGTTTTTCTCAGATGGGAAACATGAGAAGGCAT
ATTAAGATATTTCATTCTGATCAGAAACCCTATGAATGCAAAGTCTGCAATAAAGCTTAT
GGCATTCAACAAAGTTTTCGCTACCACATGAGAGATAAACATGGAATAACAACTGTTGCC
AAACCAGTGTCAAAATCTAAAAAAGCAAATGCCGACA

InterProScan

SMART
Znf_C2H2_type (IPR013087) - T[91-114] 2.5 - T[137-160] 5.7E-4 - T[166-189] 4.4E-4
ProSitePatterns
Znf_C2H2_type (IPR013087) - T[93-114] . - T[139-160] . - T[168-189] .
Pfam
Znf_C2H2_type (IPR013087) - T[137-160] 2.4E-4 - T[166-189] 0.0022
ProSiteProfiles
Znf_C2H2_type (IPR013087) - T[137-165] 12.321 - T[166-194] 12.3
SUPERFAMILY
Znf_C2H2_sf (IPR036236) - T[137-186] 7.24E-12

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value





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