- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Harore.CG.MTP2014.S2...' >
- Transcript 'KH2012:KH.C5.42.v3.A...' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S10.g00420.01.t
Possible name(s)
EXD1; EXD3; EXOSC10
Gene model
Location
S10 [147,986 / 153,673]
Amino acid sequence
Length: 845
>Phmamm.CG.MTP2014.S10.g00420.01.p
MEEKPSTSENVEINADETAKQSLGSVLQFVRSTHGFPGAGDDFEFYSSYAGFRDFVADQK
TRLLNGMSQLLSNQGLKKNFGTTSTDIDEYTDCLIECNDGLLERVSVLIDECSGVRKTKD
TSEKSPDILTNSAAVEEPKTVISSWNKVNKQGKSKTFRLMQAHNILRPQLKFSEVIDNTN
TPFVPKLTTKPNALKPLGQSLLEAHIKADPGHSSVDSLIKQARKAQTKEFYEHPYKYELE
HWEPEDEQLGIVNPVKYEDSSPDEHVMITTVPQLQDLLNDLKCVKEFAVDLEHHSYRTFQ
GITCLMQISTRTNDYIVDTLLLRSDLHILNEVFTDPAIVKVFHGADSDVMWLQRDFGIYI
VNLFDTGIASHSLQLPRHSLDFLLHYYCDLNVDKKFQLADWRIRPIPEEMIAYAKGDTHY
LLYVYDLMRNELVERDNGNSNLLRHVLNSSRDLCLMRYEKPLTTPTSHLLLLERRNRRGK
GKALNTQQMEALRLIYNWRDSMARQEDESTGYVLPNHMLLQIAEILPREAQGVLACCNPI
PPLLRQHVSVVHRLVMDARAKPNAKPGTSAKESNQATPETRVPVPAKSEDTYEDFLRCPH
DWSRGRPAQISFPRVQKGKIKFLSTSSLFGPAGNESTPKSVRYASTPTKPDSKVVLQKLN
AIRQATWNPFQLFMPGGSTKSIKRTISESVASDSNNVSPPTLRQMLSGDFVWKMKRMEED
EKEEVKIDNDPPKTFGTVINVPEEARRGTEEQAQVLRNMMKPRKHAGNRTHGGHEKHQHS
FSAPAVTFEPTQPNIHGQFHNQAAKRGFKRNRPGGNSNFVPHKFSDDDYSRFQRRGSMKK
KQFRH
Nucleotide sequence
Length: 2,538
>Phmamm.CG.MTP2014.S10.g00420.01.t
ATGGAGGAAAAGCCCAGCACAAGCGAAAACGTGGAAATAAATGCCGATGAAACAGCAAAG
CAATCTCTGGGGTCCGTGTTGCAGTTTGTTCGATCCACCCACGGTTTTCCAGGAGCTGGT
GATGATTTTGAGTTTTACAGCAGCTATGCAGGGTTTCGTGATTTTGTCGCGGACCAAAAG
ACTCGATTGCTCAATGGCATGTCACAACTTTTGTCTAACCAAGGATTAAAGAAAAACTTT
GGCACCACCAGTACTGACATTGATGAATACACTGATTGCCTAATTGAATGCAATGATGGT
CTGCTGGAGAGAGTGTCAGTTCTAATTGATGAGTGCAGTGGAGTCAGAAAGACTAAGGAT
ACAAGTGAAAAAAGTCCTGATATATTAACAAATTCAGCAGCAGTTGAAGAGCCAAAAACA
GTCATATCTTCATGGAACAAAGTAAACAAACAAGGAAAATCAAAAACATTTAGGTTAATG
CAAGCCCATAACATCTTGAGACCTCAGCTGAAGTTCAGTGAAGTTATTGACAACACAAAC
ACTCCATTTGTTCCCAAACTTACCACAAAACCCAATGCATTGAAACCTCTTGGCCAAAGC
CTGTTGGAAGCTCATATAAAAGCGGACCCAGGGCACAGCAGCGTAGACAGTTTGATAAAA
CAAGCTAGAAAGGCACAAACAAAAGAATTTTATGAACATCCCTATAAGTATGAGCTGGAA
CATTGGGAACCAGAAGATGAGCAGCTTGGAATAGTGAATCCAGTGAAGTATGAGGATTCA
TCTCCAGATGAACACGTTATGATCACCACTGTTCCACAATTACAAGACCTGTTAAATGAT
TTGAAATGTGTCAAAGAGTTTGCAGTTGATTTGGAGCATCATTCGTATAGAACTTTTCAG
GGAATCACATGCTTAATGCAGATATCAACTCGAACAAACGACTACATTGTGGACACATTG
CTTTTACGATCTGATCTTCACATTCTCAATGAGGTTTTTACTGATCCAGCAATAGTGAAG
GTATTCCATGGTGCTGATTCAGATGTGATGTGGCTGCAGAGAGACTTTGGAATTTACATT
GTTAATCTTTTCGATACTGGAATTGCTTCCCATTCCCTGCAGTTGCCACGACATTCGCTG
GATTTCCTTCTTCATTACTACTGTGATTTAAATGTTGACAAAAAGTTTCAACTGGCTGAT
TGGCGGATCAGACCTATACCAGAGGAAATGATCGCATATGCAAAGGGCGACACACACTAT
CTGCTTTACGTTTACGATCTAATGAGAAATGAGTTGGTGGAGCGGGACAATGGCAATTCT
AACCTCTTGCGTCATGTGCTGAACAGCAGCCGTGATTTGTGTCTGATGCGTTATGAGAAA
CCCTTGACCACACCCACGTCTCACCTTCTTTTGCTGGAAAGACGAAACCGACGCGGTAAG
GGCAAAGCCTTGAACACCCAGCAAATGGAAGCTCTACGTCTCATCTACAACTGGCGTGAC
TCCATGGCGAGGCAGGAAGATGAAAGCACTGGGTACGTTCTGCCGAACCACATGCTACTG
CAGATAGCTGAAATTTTGCCACGCGAAGCGCAGGGTGTCCTTGCTTGCTGCAATCCAATC
CCACCCTTACTCAGACAACATGTTTCAGTGGTACACCGTTTGGTTATGGATGCCAGAGCT
AAACCAAATGCTAAACCAGGAACTTCGGCGAAAGAGTCAAATCAAGCCACCCCAGAGACA
AGGGTACCAGTTCCTGCTAAATCAGAAGACACTTATGAAGATTTTCTGCGTTGCCCGCAT
GACTGGTCACGTGGCAGACCAGCCCAAATTTCTTTTCCTCGGGTACAGAAGGGGAAAATC
AAATTTCTGTCAACTTCTAGTCTTTTTGGTCCTGCTGGAAACGAATCAACGCCTAAAAGT
GTAAGGTATGCCTCAACCCCGACCAAGCCAGACAGCAAGGTTGTTCTGCAAAAGTTGAAT
GCCATTCGCCAGGCAACATGGAACCCCTTTCAACTGTTCATGCCTGGTGGTTCCACTAAA
TCAATTAAAAGAACTATCTCCGAGAGTGTGGCCAGTGACAGTAATAATGTAAGTCCGCCT
ACATTGCGACAAATGCTTTCAGGAGATTTTGTCTGGAAAATGAAACGAATGGAGGAAGAT
GAAAAAGAGGAAGTGAAAATTGATAATGACCCACCAAAGACATTTGGCACAGTTATCAAT
GTTCCTGAAGAGGCACGTCGAGGCACAGAAGAGCAAGCACAAGTGCTTCGGAACATGATG
AAACCCAGAAAGCATGCAGGGAATAGGACTCACGGTGGTCATGAAAAACACCAGCACTCA
TTCAGTGCGCCAGCTGTTACATTCGAACCAACACAGCCAAACATACATGGCCAGTTTCAC
AACCAAGCAGCAAAACGAGGTTTCAAAAGAAACAGGCCTGGTGGAAATAGTAACTTTGTT
CCTCATAAGTTTTCTGATGATGACTATTCCCGGTTTCAAAGGAGGGGTTCAATGAAAAAG
AAACAATTTCGACATTGA
| Pfam |
Exosome-assoc_fac_Rrp6_N (IPR012588) - T[28-114] 3.7E-14 |
| SUPERFAMILY |
RNaseH-like_sf (IPR012337) - T[165-461] 2.5E-81 |
| SMART |
3'-5'_exonuclease_dom (IPR002562) - T[265-433] 4.4E-46 |
| Pfam |
3'-5'_exonuclease_dom (IPR002562) - T[266-432] 2.3E-46 |
| SUPERFAMILY |
HRDC-like_sf (IPR010997) - T[483-565] 3.14E-23 |
| SMART |
HRDC_dom (IPR002121) - T[485-565] 1.1E-13 |
| ProSiteProfiles |
HRDC_dom (IPR002121) - T[485-565] 16.883 |
| Pfam |
HRDC_dom (IPR002121) - T[489-552] 8.3E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| EXOSX_HUMAN | 42.857 % | 567 | 0 |