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  1. Transcript 'Phmamm.CG.MTP2014.S1...'
  2. Transcript 'Harore.CG.MTP2014.S2...'
  3. Transcript 'KH2012:KH.C5.42.v3.A...'
  4. Transcript 'Phmamm.CG.MTP2014.S1...'
  5. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S10.g00420.01.t

Possible name(s)

EXD1; EXD3; EXOSC10

Location

S10 [147,986 / 153,673]

Sequences

Amino acid sequence

Length: 845

>Phmamm.CG.MTP2014.S10.g00420.01.p
MEEKPSTSENVEINADETAKQSLGSVLQFVRSTHGFPGAGDDFEFYSSYAGFRDFVADQK
TRLLNGMSQLLSNQGLKKNFGTTSTDIDEYTDCLIECNDGLLERVSVLIDECSGVRKTKD
TSEKSPDILTNSAAVEEPKTVISSWNKVNKQGKSKTFRLMQAHNILRPQLKFSEVIDNTN
TPFVPKLTTKPNALKPLGQSLLEAHIKADPGHSSVDSLIKQARKAQTKEFYEHPYKYELE
HWEPEDEQLGIVNPVKYEDSSPDEHVMITTVPQLQDLLNDLKCVKEFAVDLEHHSYRTFQ
GITCLMQISTRTNDYIVDTLLLRSDLHILNEVFTDPAIVKVFHGADSDVMWLQRDFGIYI
VNLFDTGIASHSLQLPRHSLDFLLHYYCDLNVDKKFQLADWRIRPIPEEMIAYAKGDTHY
LLYVYDLMRNELVERDNGNSNLLRHVLNSSRDLCLMRYEKPLTTPTSHLLLLERRNRRGK
GKALNTQQMEALRLIYNWRDSMARQEDESTGYVLPNHMLLQIAEILPREAQGVLACCNPI
PPLLRQHVSVVHRLVMDARAKPNAKPGTSAKESNQATPETRVPVPAKSEDTYEDFLRCPH
DWSRGRPAQISFPRVQKGKIKFLSTSSLFGPAGNESTPKSVRYASTPTKPDSKVVLQKLN
AIRQATWNPFQLFMPGGSTKSIKRTISESVASDSNNVSPPTLRQMLSGDFVWKMKRMEED
EKEEVKIDNDPPKTFGTVINVPEEARRGTEEQAQVLRNMMKPRKHAGNRTHGGHEKHQHS
FSAPAVTFEPTQPNIHGQFHNQAAKRGFKRNRPGGNSNFVPHKFSDDDYSRFQRRGSMKK
KQFRH

Nucleotide sequence

Length: 2,538

>Phmamm.CG.MTP2014.S10.g00420.01.t
ATGGAGGAAAAGCCCAGCACAAGCGAAAACGTGGAAATAAATGCCGATGAAACAGCAAAG
CAATCTCTGGGGTCCGTGTTGCAGTTTGTTCGATCCACCCACGGTTTTCCAGGAGCTGGT
GATGATTTTGAGTTTTACAGCAGCTATGCAGGGTTTCGTGATTTTGTCGCGGACCAAAAG
ACTCGATTGCTCAATGGCATGTCACAACTTTTGTCTAACCAAGGATTAAAGAAAAACTTT
GGCACCACCAGTACTGACATTGATGAATACACTGATTGCCTAATTGAATGCAATGATGGT
CTGCTGGAGAGAGTGTCAGTTCTAATTGATGAGTGCAGTGGAGTCAGAAAGACTAAGGAT
ACAAGTGAAAAAAGTCCTGATATATTAACAAATTCAGCAGCAGTTGAAGAGCCAAAAACA
GTCATATCTTCATGGAACAAAGTAAACAAACAAGGAAAATCAAAAACATTTAGGTTAATG
CAAGCCCATAACATCTTGAGACCTCAGCTGAAGTTCAGTGAAGTTATTGACAACACAAAC
ACTCCATTTGTTCCCAAACTTACCACAAAACCCAATGCATTGAAACCTCTTGGCCAAAGC
CTGTTGGAAGCTCATATAAAAGCGGACCCAGGGCACAGCAGCGTAGACAGTTTGATAAAA
CAAGCTAGAAAGGCACAAACAAAAGAATTTTATGAACATCCCTATAAGTATGAGCTGGAA
CATTGGGAACCAGAAGATGAGCAGCTTGGAATAGTGAATCCAGTGAAGTATGAGGATTCA
TCTCCAGATGAACACGTTATGATCACCACTGTTCCACAATTACAAGACCTGTTAAATGAT
TTGAAATGTGTCAAAGAGTTTGCAGTTGATTTGGAGCATCATTCGTATAGAACTTTTCAG
GGAATCACATGCTTAATGCAGATATCAACTCGAACAAACGACTACATTGTGGACACATTG
CTTTTACGATCTGATCTTCACATTCTCAATGAGGTTTTTACTGATCCAGCAATAGTGAAG
GTATTCCATGGTGCTGATTCAGATGTGATGTGGCTGCAGAGAGACTTTGGAATTTACATT
GTTAATCTTTTCGATACTGGAATTGCTTCCCATTCCCTGCAGTTGCCACGACATTCGCTG
GATTTCCTTCTTCATTACTACTGTGATTTAAATGTTGACAAAAAGTTTCAACTGGCTGAT
TGGCGGATCAGACCTATACCAGAGGAAATGATCGCATATGCAAAGGGCGACACACACTAT
CTGCTTTACGTTTACGATCTAATGAGAAATGAGTTGGTGGAGCGGGACAATGGCAATTCT
AACCTCTTGCGTCATGTGCTGAACAGCAGCCGTGATTTGTGTCTGATGCGTTATGAGAAA
CCCTTGACCACACCCACGTCTCACCTTCTTTTGCTGGAAAGACGAAACCGACGCGGTAAG
GGCAAAGCCTTGAACACCCAGCAAATGGAAGCTCTACGTCTCATCTACAACTGGCGTGAC
TCCATGGCGAGGCAGGAAGATGAAAGCACTGGGTACGTTCTGCCGAACCACATGCTACTG
CAGATAGCTGAAATTTTGCCACGCGAAGCGCAGGGTGTCCTTGCTTGCTGCAATCCAATC
CCACCCTTACTCAGACAACATGTTTCAGTGGTACACCGTTTGGTTATGGATGCCAGAGCT
AAACCAAATGCTAAACCAGGAACTTCGGCGAAAGAGTCAAATCAAGCCACCCCAGAGACA
AGGGTACCAGTTCCTGCTAAATCAGAAGACACTTATGAAGATTTTCTGCGTTGCCCGCAT
GACTGGTCACGTGGCAGACCAGCCCAAATTTCTTTTCCTCGGGTACAGAAGGGGAAAATC
AAATTTCTGTCAACTTCTAGTCTTTTTGGTCCTGCTGGAAACGAATCAACGCCTAAAAGT
GTAAGGTATGCCTCAACCCCGACCAAGCCAGACAGCAAGGTTGTTCTGCAAAAGTTGAAT
GCCATTCGCCAGGCAACATGGAACCCCTTTCAACTGTTCATGCCTGGTGGTTCCACTAAA
TCAATTAAAAGAACTATCTCCGAGAGTGTGGCCAGTGACAGTAATAATGTAAGTCCGCCT
ACATTGCGACAAATGCTTTCAGGAGATTTTGTCTGGAAAATGAAACGAATGGAGGAAGAT
GAAAAAGAGGAAGTGAAAATTGATAATGACCCACCAAAGACATTTGGCACAGTTATCAAT
GTTCCTGAAGAGGCACGTCGAGGCACAGAAGAGCAAGCACAAGTGCTTCGGAACATGATG
AAACCCAGAAAGCATGCAGGGAATAGGACTCACGGTGGTCATGAAAAACACCAGCACTCA
TTCAGTGCGCCAGCTGTTACATTCGAACCAACACAGCCAAACATACATGGCCAGTTTCAC
AACCAAGCAGCAAAACGAGGTTTCAAAAGAAACAGGCCTGGTGGAAATAGTAACTTTGTT
CCTCATAAGTTTTCTGATGATGACTATTCCCGGTTTCAAAGGAGGGGTTCAATGAAAAAG
AAACAATTTCGACATTGA

InterProScan

Pfam
Exosome-assoc_fac_Rrp6_N (IPR012588) - T[28-114] 3.7E-14
SUPERFAMILY
RNaseH-like_sf (IPR012337) - T[165-461] 2.5E-81
SMART
3'-5'_exonuclease_dom (IPR002562) - T[265-433] 4.4E-46
Pfam
3'-5'_exonuclease_dom (IPR002562) - T[266-432] 2.3E-46
SUPERFAMILY
HRDC-like_sf (IPR010997) - T[483-565] 3.14E-23
SMART
HRDC_dom (IPR002121) - T[485-565] 1.1E-13
ProSiteProfiles
HRDC_dom (IPR002121) - T[485-565] 16.883
Pfam
HRDC_dom (IPR002121) - T[489-552] 8.3E-12

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
EXOSX_HUMAN 42.857 % 567 0





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