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  1. Region 'REG00000013'
  2. Transcript 'KH2012:KH.C8.316.v1....'
  3. Transcript 'Boschl.CG.Botznik201...'
  4. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1103.g13688.01.t

Possible name(s)

LSM10; SNRPD1; SNRPD3

Location

S1103 [883 / 3,401]

Sequences

Amino acid sequence

Length: 132

>Phmamm.CG.MTP2014.S1103.g13688.01.p
FSAVLLNCISANMKLARFLMKLSHETVTIELKNGTQVHGTITGVDICMNTHLKSVKMTVK
NREPVNLDTLSIRGNNIRYYILPDSLPLDTLLVDEGPKVPKGGFRDRGRGRGRGRGRGRG
RGRGRGGPPRRF

Nucleotide sequence

Length: 717

>Phmamm.CG.MTP2014.S1103.g13688.01.t
TTTTTCTGCAGTCTTGCTGAACTGTATTTCTGCTAACATGAAGCTAGCCAGGTTTTTGAT
GAAGTTAAGCCATGAAACCGTTACCATAGAATTAAAGAATGGCACTCAAGTGCATGGGAC
TATTACAGGTGTGGACATTTGTATGAACACTCACTTGAAATCAGTTAAAATGACTGTGAA
GAATCGTGAACCAGTCAACTTGGATACTCTCAGCATTCGTGGCAATAACATACGGTATTA
TATCCTGCCAGACAGTCTGCCTTTAGATACACTTCTTGTGGATGAAGGCCCTAAAGTACC
TAAAGGAGGTTTTAGGGATCGTGGTCGTGGTAGGGGAAGAGGTAGAGGCCGGGGGCGTGG
AAGGGGAAGGGGACGCGGTGGTCCACCAAGAAGATTTTAGACTCTGTGCATTCCTTTTTT
TGGCTTCATACATTCAAGGCAGTGTTTTGCTTCATACCAAGTCTAAACAAATCCTGGCGA
TCATTTTTTTGTGTTTTTTAATAGAATTCAACCAAATTTTTTTTGCACAGAAATACTTTC
TTTCAAGTAAAACTTAAAGAAATGTGATAAACGTTTCACATTAACTTTAGGTATCGAGCT
GGTTGTATTTCTTGCATTTTTTCAATTGGGTAAATGATAATATACCTAACTGTATTGTCT
ACGTATGAATGCGTTCCCAACTTGAAAATACATTTGTAATAAATTTGGAAACGTGAA

InterProScan

PANTHER
LSm4/Sm_D1/D3 (IPR027141) - T[13-117] 1.7E-49
CDD
Sm_D1 (IPR034102) - T[14-99] 1.49812E-58
SMART
LSM_dom_euk/arc (IPR001163) - T[17-82] 5.8E-18
SUPERFAMILY
LSM_dom_sf (IPR010920) - T[17-128] 1.29E-27
Pfam
LSM_dom_euk/arc (IPR001163) - T[17-81] 6.7E-19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SMD1_HUMAN 88.506 % 161 1.43E-52





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