- Transcript 'Boleac.CG.SB_v3.S344...' >
- Transcript 'Moocul.CG.ELv1_2.S10...' >
- Molecular Tool 'Hox10-MO2 (Ikuta 2010)' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S1180.g13994.01.t
Possible name(s)
FOXA1; FOXA2; FOXA3
Gene model
Location
S1180 [23,823 / 25,461]
Amino acid sequence
Length: 545
>Phmamm.CG.MTP2014.S1180.g13994.01.p
MYGTTPSTEMLAAPTARYPVTYQPSYSTPPGVPSSYQNAVNVVPTYSTNPSGAIASPMTQ
AFGANLPHPSSVTNQYSQQLNSHVGMSSPYPVSPNIGISPNMALVPGHRPVDKGPNAYRR
TYTHAKPPYSYISLITMAIQSCPSKMMTLSEVYQWIMDLFPFYRSNQQRWQNSIRHSLSF
NDCFVKVPRSPDKPGKGSYWSLHPDAGNMFENGCYLRRQKRFKCEKKAAIKAAQQTKVKD
EPDKVKDGESYEENPMVVANNSAQLEDHEGHIDTKPVLIGDHNSPSMGQQQETNGSSLQP
LEPVVNPSQSSTIALTESGQGAQAVLSPMSTTLLVGNNQQQAMYAGYHHQTFMPQFQQVM
QTPDGLMTNLAGHPPIHMNALKQDAQYSRSHPFSINSLISDPENKDMRVYQDPQIQMQYY
SPLQSHPSSALLPPPPVSVLPQYQAAHQQEAASQPMATSASSPTTEQPQQQSSNATELNH
HVMQSVTPSHVATPHHQQQQQQQQQQQHLLTMSGINQAQISEASYYTANVQSSVMQPTQA
QQSQS
Nucleotide sequence
Length: 1,638
>Phmamm.CG.MTP2014.S1180.g13994.01.t
ATGTACGGCACTACTCCTTCAACCGAGATGCTAGCAGCACCGACAGCAAGATACCCAGTG
ACTTATCAGCCCAGCTATTCGACGCCACCAGGAGTACCATCGTCCTACCAGAACGCCGTC
AATGTGGTACCAACTTACAGTACTAACCCTTCGGGGGCCATCGCCAGCCCCATGACTCAA
GCATTCGGAGCAAATCTGCCACATCCGTCTTCAGTAACCAACCAGTATTCGCAACAGCTT
AACTCGCACGTCGGAATGTCTTCGCCATATCCAGTAAGTCCAAATATAGGAATAAGTCCC
AATATGGCGCTTGTGCCTGGACACCGACCAGTGGACAAGGGACCCAACGCTTACCGACGT
ACCTATACCCATGCGAAACCTCCTTACAGCTATATATCTTTGATCACAATGGCAATTCAG
TCTTGCCCATCGAAGATGATGACTCTAAGTGAGGTTTATCAGTGGATCATGGATTTGTTT
CCATTTTACCGTTCAAATCAGCAGCGATGGCAAAACTCAATCAGGCACAGTTTGTCCTTC
AATGACTGTTTCGTCAAAGTTCCGCGGTCGCCTGATAAACCTGGCAAAGGTTCTTACTGG
AGTTTGCATCCAGACGCAGGGAACATGTTTGAAAACGGATGCTACCTACGTAGGCAAAAG
CGCTTTAAATGCGAGAAGAAGGCTGCTATTAAAGCTGCCCAACAAACCAAAGTAAAGGAC
GAACCGGATAAGGTTAAAGACGGAGAAAGTTATGAAGAAAACCCGATGGTGGTTGCCAAC
AACTCCGCTCAACTTGAAGACCACGAAGGCCACATTGACACCAAACCGGTACTAATTGGT
GATCACAATTCACCATCAATGGGACAACAGCAGGAAACTAATGGTTCGAGCCTTCAGCCT
TTGGAGCCAGTTGTGAACCCGTCACAGTCTTCAACCATTGCTCTTACTGAGTCAGGACAA
GGTGCGCAGGCGGTGTTGTCGCCTATGTCTACCACTCTTCTGGTGGGAAACAACCAACAG
CAAGCAATGTACGCCGGCTACCATCATCAAACCTTTATGCCACAGTTTCAGCAGGTGATG
CAAACACCAGACGGTTTGATGACGAACTTAGCAGGACACCCGCCTATCCATATGAACGCT
CTAAAACAGGACGCACAGTATTCTCGCTCGCATCCATTCTCTATCAACAGTCTGATTAGC
GATCCCGAAAACAAAGACATGCGCGTTTACCAGGATCCACAAATCCAGATGCAATATTAC
TCTCCTCTTCAGTCGCATCCTTCCTCAGCCTTGCTTCCACCTCCTCCAGTCAGTGTCCTT
CCCCAATATCAAGCCGCTCATCAACAGGAAGCTGCATCTCAGCCGATGGCGACCTCTGCC
TCGTCGCCCACCACAGAACAGCCGCAGCAGCAAAGTTCGAACGCAACGGAGCTGAACCAT
CACGTGATGCAATCAGTAACGCCGAGTCACGTGGCCACACCGCATCACCAACAACAACAA
CAACAGCAGCAGCAGCAGCAACATCTTCTGACGATGTCAGGTATCAATCAGGCACAGATA
TCGGAGGCATCGTACTACACGGCTAACGTACAATCGTCAGTCATGCAGCCTACACAGGCC
CAGCAGTCCCAGAGCTAA
| SMART |
Fork_head_dom (IPR001766) - T[124-214] 3.3E-59 |
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[124-225] 4.3E-46 |
| PRINTS |
Fork_head_dom (IPR001766) - T[126-139] 7.3E-24 - T[147-164] 7.3E-24 - T[170-187] 7.3E-24 |
| ProSiteProfiles |
Fork_head_dom (IPR001766) - T[126-220] 39.252 |
| Pfam |
Fork_head_dom (IPR001766) - T[126-211] 1.9E-36 |
| ProSitePatterns |
TF_fork_head_CS_1 (IPR018122) - T[126-139] . |
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[126-220] 1.5E-39 |
| CDD |
Fork_head_dom (IPR001766) - T[126-203] 2.70895E-50 |
| ProSitePatterns |
TF_fork_head_CS_2 (IPR030456) - T[170-176] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| FOXA3_HUMAN | 78.571 % | 221 | 1.88E-67 |
| FOXA2_HUMAN | 84.874 % | 242 | 5.19E-74 |
| FOXA1_HUMAN | 57.944 % | 241 | 1.39E-73 |