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TRANSCRIPT CARD

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  1. Clone 'ciht009l24' > 
  2. Region 'REG00000645' > 
  3. Molecular Tool 'Ci-GATAb MO (Ogura 2016)' > 
  4. Molecular Tool 'ciad40b02-MO (Hamada's MO)' > 
  5. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1196.g14047.01.t

Possible name(s)

HOXA1; HOXB1; HOXD1

Gene model

Phmamm.CG.MTP2014.S1196.g14047

Location

S1196 [1,182 / 10,145]

Sequences

Amino acid sequence

Length: 289

>Phmamm.CG.MTP2014.S1196.g14047.01.p
MNSYMEYPIHNPENNLYSNRMHRHLPPSPEIDPAVGSAPSCYSACALDEAPQHSRNDVRI
NPDPIQATHDSSPTRTSPENSPITPNGLLDPGYGHPTTTNYNPGFGYPAPNQYYGAIHGA
APNPTASMYPIASHYPNAEAYNNSKALYGGNYHPGNVYASYNSCLISGNGNDCAQMGSGE
TMSACGVHDRNSPPNINFSSASEQQQGTTDSANTYDWMKIKRNPPKNVYYTQNKMADFSG
YGNQLGNGRTNFTTKQLTELEKEFHYNKYLTRARRVEIAAALHLNETQV

Nucleotide sequence

Length: 969

>Phmamm.CG.MTP2014.S1196.g14047.01.t
CAACAACGCATTAGGTCAAAAAATTGAGCGCTTTGTTGTCGCATTTCCTGAATCTGGAGA
CGAAAGGAAAGAAAACTTTTCCATTGGATTTCAACCCAGTCATGAACTCCTATATGGAAT
ATCCCATTCATAACCCCGAAAATAACCTCTACTCCAATCGAATGCACCGCCATTTACCTC
CCTCGCCTGAGATTGACCCAGCGGTGGGGTCAGCCCCTAGCTGCTACAGCGCATGCGCAC
TAGACGAAGCCCCCCAACACTCGCGCAATGACGTCAGAATTAACCCAGACCCCATTCAAG
CGACCCATGATTCGAGTCCCACCCGTACATCCCCCGAAAATTCACCTATAACCCCCAATG
GACTTTTAGACCCGGGGTACGGACACCCCACCACTACAAACTATAATCCAGGTTTTGGGT
ACCCAGCCCCAAATCAATATTATGGGGCTATCCATGGGGCAGCACCCAACCCCACTGCCT
CCATGTACCCCATTGCCTCACACTACCCCAATGCAGAAGCGTATAACAACTCCAAAGCGT
TATACGGGGGTAACTATCACCCTGGTAACGTTTATGCCTCATACAATTCTTGTTTGATTT
CGGGAAATGGAAATGATTGTGCACAAATGGGATCAGGCGAAACGATGTCAGCCTGCGGAG
TTCACGACCGCAATTCCCCGCCGAATATCAATTTCAGCTCGGCATCAGAACAACAGCAAG
GAACCACCGATTCCGCCAATACATACGACTGGATGAAGATCAAACGAAACCCACCGAAAA
ATGTATATTATACGCAAAACAAAATGGCGGATTTTTCTGGTTACGGGAACCAACTAGGAA
ACGGCAGGACGAATTTTACAACAAAACAGCTGACCGAGCTGGAAAAAGAATTCCATTACA
ATAAATATTTGACAAGAGCTAGAAGGGTCGAAATAGCTGCAGCTCTCCATTTAAATGAAA
CACAGGTAT

InterProScan

SUPERFAMILY
Homeobox-like_sf (IPR009057) - T[231-289] 8.13E-13
ProSiteProfiles
Homeobox_dom (IPR001356) - T[243-289] 11.904
SMART
Homeobox_dom (IPR001356) - T[245-289] 0.0015
Pfam
Homeobox_dom (IPR001356) - T[248-289] 8.8E-12
CDD
Homeobox_dom (IPR001356) - T[249-289] 1.70823E-13

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
HXA1_HUMAN 67.073 % 110 3.98E-28
HXD1_HUMAN 41.216 % 98.6 6.6E-24
HXB1_HUMAN 62.963 % 108 9.3E-28