- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Phfumi.CG.MTP2014.S4...' >
- Transcript 'Harore.CG.MTP2014.S3...' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S11.g00478.01.t
Possible name(s)
CHL1; L1CAM; NRCAM
Gene model
Location
S11 [305,517 / 321,226]
Amino acid sequence
Length: 1,024
>Phmamm.CG.MTP2014.S11.g00478.01.p
TANPVPDREPAIISPSNSLEPQIQLKGDTLTLKCAATGKPTPTIEWSKLSGNWPTDRYTV
QDSGHTVVITNASYSDDADYRCTATNYLGSAIATASVQVQSRPFFASDESKPRDVVQTPG
GSVEIRCDVEGLPTPTTSWRINGVPIDEAPEMTNRDVSPNLIRLWDLKSSDSSVYQCVTK
NTHGTLIEQAFVNVLTSRPIPLDSNKAVYQQVEGKSVDIECHVFGSPPATIFWRPLVDRM
EMFDNNSVLRINAVQSSDSGTYKCLASNEFGNAEVDFILEVLQPTSLSPVNGSTQYAELG
KSVTMELELDIDDQLQPGPIRWKKNNIPVCSGVTCTISGLSFDDAGDYKVSVNTSLDGAT
TNINLVVRGKPNAPLLFQYTTTADPLVVNFRWESAYDNNAPVEEYKVEFEENQFAPGIWR
TLKSGILPNQTSIAVTLSPFVNYRFRAIARNVVGWGKTSNVVGRYQTPPGAPVLNPTGVT
GKGTDSDNMLIKWKPVKQIDQNGPGFAYIVSYCLAKSCTRDGPWMKAEVDGSTTMYEVKQ
TPVYEKYFIKVQSFNNDGNAPEPKVEVGYSGEDTPVAYPLNVQVETDEENPTIARLSWEP
VANVDVRGKLRGYVVSYRKPGESWNEVTVGNVTNATVTGLDPYMVYQFAVSVFNTKSVGR
RSEFIRIKTPESIPGAPSNLRVVDKTATSLMFDWDSPKTPNGKITGYVLTCKAVNSTSED
SEIELLEPGLKLESLSPAKVYEITVAAKTAKGVGTEKALTQVSTHPEGAPGKVKFNATVD
ETNVTVTWQKPEGLPADKYFVESRRRDSNEWNRIGTYSNEQTEKPVAFSSFDPVSTYYVR
IVAVNPYGESTTSPVVVEIGGTAINQGSITGEIWFIVIIALVVLLVIVLVLICLLRKKRG
GKYSVAEKEGRLVDTESNVSNRQEVGEYNDEKDDEIKKPLAPKETTDIPSNGDASATPSN
GVPLLAARTRGDSVGGDSIDAFADAEAREFNEDGSFIGQYGTIPSESVSNSAATSPGEQN
GDAV
Nucleotide sequence
Length: 3,973
>Phmamm.CG.MTP2014.S11.g00478.01.t
AACAGCCAACCCAGTTCCTGATCGAGAACCTGCGATTATTTCTCCTTCTAACAGCCTAGA
ACCCCAAATCCAACTCAAGGGCGACACCTTGACATTAAAATGTGCCGCAACGGGAAAACC
AACGCCAACAATTGAATGGTCCAAACTATCAGGTAACTGGCCAACTGACCGATACACGGT
TCAAGATTCTGGTCACACTGTTGTGATTACAAACGCGTCATACAGCGACGATGCCGATTA
CAGGTGTACCGCTACAAACTACTTGGGTAGTGCAATAGCGACCGCTAGCGTCCAGGTTCA
GTCCAGGCCGTTTTTTGCGTCGGATGAGAGCAAGCCTCGTGACGTGGTACAGACACCAGG
TGGCAGTGTTGAGATTAGGTGTGACGTCGAAGGTCTTCCCACTCCAACCACGTCATGGAG
GATTAATGGTGTTCCAATTGATGAGGCACCTGAAATGACAAATCGTGACGTTTCACCGAA
CCTTATACGACTGTGGGATTTAAAATCTTCTGATTCTTCTGTTTACCAGTGCGTCACAAA
GAATACACATGGAACGTTGATTGAACAGGCATTTGTCAACGTTTTAACCTCCCGCCCTAT
TCCATTGGATAGCAATAAAGCAGTTTATCAACAAGTTGAAGGAAAATCTGTTGACATCGA
GTGTCACGTGTTTGGATCTCCCCCAGCCACTATCTTTTGGCGACCTCTTGTGGACAGAAT
GGAAATGTTCGACAACAATTCGGTTCTACGGATAAATGCCGTGCAATCATCCGATTCTGG
AACATACAAATGTTTGGCAAGCAACGAATTTGGTAACGCTGAGGTCGATTTTATACTTGA
AGTTCTACAACCGACTAGTTTGTCACCAGTCAATGGCTCGACTCAATATGCTGAACTCGG
AAAATCTGTCACCATGGAACTAGAGCTCGATATTGACGACCAGCTTCAACCTGGACCAAT
TCGTTGGAAGAAGAATAACATACCCGTGTGTTCTGGTGTCACGTGCACTATATCCGGTCT
CAGTTTTGATGACGCGGGCGACTACAAAGTTTCGGTTAACACGTCGCTAGATGGCGCAAC
AACCAACATCAACCTTGTCGTCCGAGGAAAGCCGAACGCTCCGTTGCTTTTTCAATACAC
CACAACGGCTGATCCCTTAGTTGTAAATTTTAGGTGGGAGTCCGCCTATGATAACAACGC
TCCTGTAGAAGAATACAAAGTTGAGTTTGAGGAAAACCAATTCGCTCCTGGCATTTGGAG
AACATTGAAAAGCGGAATTTTACCAAACCAAACAAGTATTGCCGTCACACTTTCACCTTT
TGTAAATTACCGATTTCGAGCTATTGCAAGAAATGTTGTTGGTTGGGGAAAGACTAGCAA
CGTCGTAGGAAGATACCAGACACCACCAGGAGCACCGGTTCTGAATCCCACTGGTGTGAC
AGGCAAAGGAACAGATAGTGACAATATGCTGATCAAGTGGAAACCAGTCAAACAAATTGA
TCAAAATGGACCGGGATTCGCGTACATTGTCAGCTACTGCTTGGCGAAAAGTTGTACACG
AGATGGACCTTGGATGAAAGCTGAGGTGGACGGCAGCACAACCATGTATGAAGTAAAACA
AACACCTGTGTACGAAAAATACTTCATCAAAGTTCAAAGTTTCAACAACGACGGGAATGC
CCCCGAACCGAAAGTTGAGGTTGGATACTCTGGAGAAGACACACCCGTTGCCTATCCATT
AAACGTTCAAGTTGAAACGGACGAGGAAAACCCTACCATTGCCCGGTTGTCATGGGAACC
AGTTGCAAATGTCGATGTTCGTGGCAAATTACGGGGATATGTTGTTTCATACCGCAAGCC
GGGAGAAAGTTGGAACGAAGTTACTGTTGGAAATGTCACAAATGCAACTGTAACTGGTCT
CGACCCATATATGGTTTATCAGTTTGCTGTATCAGTGTTTAACACTAAATCGGTTGGACG
ACGTTCGGAATTTATCCGCATAAAGACGCCAGAGAGCATACCAGGCGCACCTTCCAACCT
TCGGGTTGTTGACAAAACTGCAACATCGCTCATGTTCGACTGGGATTCCCCAAAAACACC
AAACGGCAAAATTACGGGATATGTTCTTACATGCAAAGCTGTCAACAGCACGAGCGAAGA
TAGTGAGATTGAACTTCTTGAACCTGGTTTAAAACTGGAAAGTCTTTCGCCGGCAAAAGT
CTACGAAATTACAGTTGCAGCAAAAACAGCAAAAGGTGTGGGGACAGAGAAAGCTTTAAC
ACAAGTTTCAACCCACCCTGAAGGAGCTCCCGGAAAAGTCAAGTTCAATGCTACAGTAGA
TGAAACCAACGTCACAGTCACGTGGCAAAAACCGGAAGGTTTGCCAGCCGACAAATATTT
TGTTGAAAGCCGCCGAAGAGATTCTAACGAATGGAATCGGATTGGAACTTATTCAAACGA
ACAGACAGAAAAACCAGTTGCGTTTTCATCATTCGACCCTGTTAGCACTTATTATGTGCG
GATCGTGGCTGTAAATCCATACGGAGAAAGTACGACAAGTCCAGTTGTGGTGGAGATTGG
AGGAACAGCGATCAATCAAGGATCTATCACCGGCGAAATTTGGTTTATCGTAATCATTGC
CTTGGTTGTTTTACTGGTCATTGTGTTGGTTCTAATTTGTCTGTTGCGAAAAAAGCGAGG
TGGCAAATATTCAGTGGCTGAAAAAGAGGGTCGACTTGTCGACACTGAATCAAACGTTTC
AAACCGCCAAGAAGTCGGCGAATATAATGACGAGAAAGACGATGAAATAAAGAAACCACT
CGCGCCCAAGGAAACGACCGACATCCCATCAAATGGAGACGCCTCTGCTACGCCTTCCAA
CGGTGTACCTCTTTTAGCAGCTCGAACAAGGGGCGACAGCGTTGGTGGTGATTCGATCGA
TGCTTTTGCTGATGCTGAAGCTCGCGAGTTCAACGAAGACGGCTCGTTTATCGGTCAATA
CGGCACAATCCCAAGCGAAAGTGTGAGCAACTCCGCAGCGACATCTCCCGGCGAACAGAA
CGGCGACGCAGTCTGAAACAGTCGTGGAACTTTGGTAATTGCGATGGAGAGCAAATTGGT
CTTCATTGTGCGTTGTGTGTCACCGTGTTCCTGGGGAGCGGTCGCCCGTCAGTCAACCCC
AACTAAAACTGATCAAAGTCCAATAGTGTTCTGTTAAACGCATTGCTTATTGGAGTCATA
CCTTTGAAGTGCGCTTCATGCTCTAAAAACTACATGCCGTAATATTTTGCAAAAACTGGT
TTCAAAACAGTTTTACCGCTTTTAGATTGTTTGGCCTTAATTCACATCAAGCAGCTTCAG
CCAGTCAATATCATGTCCTTTGTTTGTTTCAGCTTATTATTGTCTTTAAGTTGCTTTTGC
GTGTTATTTATTGTACATTAAACGTAAGTTTCTATTTGCTAAATATGTTGGCAAAGTGAC
CAACGGCTGAAGATCGCAACGCTATCCAAATTACACAATTAAGAGTTTTTAATGGTTTTA
TGTTAGTGGGCAGAGAATCGTTTTTACAACCTGCACTAATTTTTAGTTTAGGCTACTTGC
CGTTACTAACACAATCTGCACCTATGTGTTTCTAGTAAAACATGTGGGCTACAGTATATT
ACCATCTCACCATAGGTAAACAAAGCCTAAACAAGAGAAAATACTTAAATCACATCACAT
TTTTCCGAGCGCTTCGTGAGGTAAATTGCGACAACAGGGCTATGTTAATTGTATTTACAT
GTGTTCTACAATTGCAACTGAATTTTTTTGTCCGGAAAGAATCATAGAAGATTTAAGTGG
TTCTGTTTCCAAATTATTGTTGCACAGCGCGTACTTTTTAATCGTGCGTAAAGAAACTTT
GTTTTCGTATTTTATGCTCGGCTTATTGTTCTCACTTGGACGCTTTGTGAACTACTGTGA
TGGAAATACATCG
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[10-100] 12.858 - T[103-193] 10.426 - T[199-276] 10.608 |
| Gene3D |
Ig-like_fold (IPR013783) - T[10-101] 8.9E-20 - T[109-196] 5.0E-15 - T[205-281] 7.7E-15 - T[357-473] 5.1E-17 - T[474-573] 7.6E-18 - T[574-670] 6.5E-18 - T[671-769] 5.3E-19 - T[770-865] 5.0E-12 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[13-105] 7.14E-18 - T[112-197] 2.51E-14 - T[210-283] 3.35E-15 - T[294-379] 5.68E-7 |
| SMART |
Ig_sub (IPR003599) - T[19-100] 1.8E-11 - T[112-195] 1.4E-7 - T[206-282] 2.2E-9 - T[292-368] 2.2 |
| SMART |
Ig_sub2 (IPR003598) - T[25-89] 9.1E-13 - T[118-184] 4.4E-7 - T[212-271] 1.7E-12 |
| Pfam |
Ig_I-set (IPR013098) - T[25-99] 7.7E-14 - T[110-194] 3.7E-9 - T[212-281] 1.7E-10 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[370-562] 1.18E-21 - T[579-766] 7.31E-36 - T[762-856] 1.29E-13 |
| SMART |
FN3_dom (IPR003961) - T[371-456] 0.25 - T[470-561] 0.13 - T[576-659] 3.8E-7 - T[674-754] 7.6E-12 - T[767-850] 6.7E-5 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[373-470] 14.343 - T[472-573] 16.197 - T[578-672] 19.148 - T[676-767] 19.022 - T[769-865] 14.856 |
| CDD |
FN3_dom (IPR003961) - T[388-462] 2.8921E-7 - T[475-558] 3.13351E-5 - T[579-669] 1.07274E-11 - T[674-764] 1.80245E-12 - T[768-857] 1.61093E-9 |
| Pfam |
FN3_dom (IPR003961) - T[475-561] 1.1E-6 - T[579-662] 8.8E-13 - T[676-756] 1.9E-14 - T[769-853] 2.6E-8 |
| Pfam |
Neurofascin/L1/NrCAM_C (IPR026966) - T[896-1002] 9.7E-16 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NRCAM_HUMAN | 31.899 % | 468 | 1.27E-145 |
| NCHL1_HUMAN | 29.887 % | 418 | 4.61E-128 |
| L1CAM_HUMAN | 31.256 % | 442 | 1.4E-136 |