- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S11.g00478.02.t
Possible name(s)
CHL1; L1CAM; NRCAM
Gene model
Location
S11 [306,414 / 324,757]
Amino acid sequence
Length: 1,207
>Phmamm.CG.MTP2014.S11.g00478.02.p
MFCLLGAVQATIPRPPRITQQPNEITYAIGQVGIVLKCAADALPEVSTTDGGSEKLSEQE
LSEHEGIYQCFATNDYGTAMTNEITLKAAKSPYQQPQDVGLTPRVGESLQFKCNFDSNAG
QTITWSFNKPGFTLSDRVSQTSEGGLVFANVIANDDKLEFYCIVKDLATRKSTDGTHYLL
KVDKANPVPDREPAIISPSNSLEPQIQLKGDTLTLKCAATGKPTPTIEWSKLSGNWPTDR
YTVQDSGHTVVITNASYSDDADYRCTATNYLGSAIATASVQVQSRPFFASDESKPRDVVQ
TPGGSVEIRCDVEGLPTPTTSWRINGVPIDEAPEMTNRDVSPNLIRLWDLKSSDSSVYQC
VTKNTHGTLIEQAFVNVLTSRPIPLDSNKAVYQQVEGKSVDIECHVFGSPPATIFWRPLV
DRMEMFDNNSVLRINAVQSSDSGTYKCLASNEFGNAEVDFILEVLQPTSLSPVNGSTQYA
ELGKSVTMELELDIDDQLQPGPIRWKKNNIPVCSGVTCTISGLSFDDAGDYKVSVNTSLD
GATTNINLVVRGKPNAPLLFQYTTTADPLVVNFRWESAYDNNAPVEEYKVEFEENQFAPG
IWRTLKSGILPNQTSIAVTLSPFVNYRFRAIARNVVGWGKTSNVVGRYQTPPGAPVLNPT
GVTGKGTDSDNMLIKWKPVKQIDQNGPGFAYIVSYCLAKSCTRDGPWMKAEVDGSTTMYE
VKQTPVYEKYFIKVQSFNNDGNAPEPKVEVGYSGEDTPVAYPLNVQVETDEENPTIARLS
WEPVANVDVRGKLRGYVVSYRKPGESWNEVTVGNVTNATVTGLDPYMVYQFAVSVFNTKS
VGRRSEFIRIKTPESIPGAPSNLRVVDKTATSLMFDWDSPKTPNGKITGYVLTCKAVNST
SEDSEIELLEPGLKLESLSPAKVYEITVAAKTAKGVGTEKALTQVSTHPEGAPGKVKFNA
TVDETNVTVTWQKPEGLPADKYFVESRRRDSNEWNRIGTYSNEQTEKPVAFSSFDPVSTY
YVRIVAVNPYGESTTSPVVVEIGGTAINQGSITGEIWFIVIIALVVLLVIVLVLICLLRK
KRGGKYSVAEKEGRLVDTESNVSNRQEVGEYNDEKDDEIKKPLAPKETTDIPSNGDASAT
PSNGVPLLAARTRGDSVGGDSIDAFADAEAREFNEDGSFIGQYGTIPSESVSNSAATSPG
EQNGDAV
Nucleotide sequence
Length: 3,624
>Phmamm.CG.MTP2014.S11.g00478.02.t
ATGTTTTGCTTACTGGGAGCAGTGCAGGCTACAATTCCGAGGCCCCCGAGAATAACTCAA
CAACCCAATGAGATAACGTATGCAATCGGCCAGGTGGGGATTGTACTGAAATGTGCTGCT
GATGCTTTGCCCGAAGTTTCAACAACCGATGGGGGAAGTGAGAAGCTATCCGAACAGGAA
CTGAGTGAGCATGAAGGCATATATCAATGTTTTGCTACCAACGACTATGGAACCGCCATG
ACAAACGAAATCACTCTAAAAGCTGCAAAATCGCCCTATCAACAACCACAAGATGTAGGT
TTGACACCACGAGTAGGCGAATCGCTCCAATTCAAATGCAACTTCGATAGCAATGCTGGT
CAGACTATTACCTGGAGCTTCAACAAACCCGGATTCACGCTTTCCGACCGGGTATCACAG
ACATCCGAAGGCGGTCTGGTATTCGCTAATGTTATTGCGAATGACGACAAGCTTGAGTTT
TACTGCATCGTAAAAGATTTGGCAACTCGCAAATCTACCGATGGTACACATTACTTACTA
AAAGTAGACAAAGCCAACCCAGTTCCTGATCGAGAACCTGCGATTATTTCTCCTTCTAAC
AGCCTAGAACCCCAAATCCAACTCAAGGGCGACACCTTGACATTAAAATGTGCCGCAACG
GGAAAACCAACGCCAACAATTGAATGGTCCAAACTATCAGGTAACTGGCCAACTGACCGA
TACACGGTTCAAGATTCTGGTCACACTGTTGTGATTACAAACGCGTCATACAGCGACGAT
GCCGATTACAGGTGTACCGCTACAAACTACTTGGGTAGTGCAATAGCGACCGCTAGCGTC
CAGGTTCAGTCCAGGCCGTTTTTTGCGTCGGATGAGAGCAAGCCTCGTGACGTGGTACAG
ACACCAGGTGGCAGTGTTGAGATTAGGTGTGACGTCGAAGGTCTTCCCACTCCAACCACG
TCATGGAGGATTAATGGTGTTCCAATTGATGAGGCACCTGAAATGACAAATCGTGACGTT
TCACCGAACCTTATACGACTGTGGGATTTAAAATCTTCTGATTCTTCTGTTTACCAGTGC
GTCACAAAGAATACACATGGAACGTTGATTGAACAGGCATTTGTCAACGTTTTAACCTCC
CGCCCTATTCCATTGGATAGCAATAAAGCAGTTTATCAACAAGTTGAAGGAAAATCTGTT
GACATCGAGTGTCACGTGTTTGGATCTCCCCCAGCCACTATCTTTTGGCGACCTCTTGTG
GACAGAATGGAAATGTTCGACAACAATTCGGTTCTACGGATAAATGCCGTGCAATCATCC
GATTCTGGAACATACAAATGTTTGGCAAGCAACGAATTTGGTAACGCTGAGGTCGATTTT
ATACTTGAAGTTCTACAACCGACTAGTTTGTCACCAGTCAATGGCTCGACTCAATATGCT
GAACTCGGAAAATCTGTCACCATGGAACTAGAGCTCGATATTGACGACCAGCTTCAACCT
GGACCAATTCGTTGGAAGAAGAATAACATACCCGTGTGTTCTGGTGTCACGTGCACTATA
TCCGGTCTCAGTTTTGATGACGCGGGCGACTACAAAGTTTCGGTTAACACGTCGCTAGAT
GGCGCAACAACCAACATCAACCTTGTCGTCCGAGGAAAGCCGAACGCTCCGTTGCTTTTT
CAATACACCACAACGGCTGATCCCTTAGTTGTAAATTTTAGGTGGGAGTCCGCCTATGAT
AACAACGCTCCTGTAGAAGAATACAAAGTTGAGTTTGAGGAAAACCAATTCGCTCCTGGC
ATTTGGAGAACATTGAAAAGCGGAATTTTACCAAACCAAACAAGTATTGCCGTCACACTT
TCACCTTTTGTAAATTACCGATTTCGAGCTATTGCAAGAAATGTTGTTGGTTGGGGAAAG
ACTAGCAACGTCGTAGGAAGATACCAGACACCACCAGGAGCACCGGTTCTGAATCCCACT
GGTGTGACAGGCAAAGGAACAGATAGTGACAATATGCTGATCAAGTGGAAACCAGTCAAA
CAAATTGATCAAAATGGACCGGGATTCGCGTACATTGTCAGCTACTGCTTGGCGAAAAGT
TGTACACGAGATGGACCTTGGATGAAAGCTGAGGTGGACGGCAGCACAACCATGTATGAA
GTAAAACAAACACCTGTGTACGAAAAATACTTCATCAAAGTTCAAAGTTTCAACAACGAC
GGGAATGCCCCCGAACCGAAAGTTGAGGTTGGATACTCTGGAGAAGACACACCCGTTGCC
TATCCATTAAACGTTCAAGTTGAAACGGACGAGGAAAACCCTACCATTGCCCGGTTGTCA
TGGGAACCAGTTGCAAATGTCGATGTTCGTGGCAAATTACGGGGATATGTTGTTTCATAC
CGCAAGCCGGGAGAAAGTTGGAACGAAGTTACTGTTGGAAATGTCACAAATGCAACTGTA
ACTGGTCTCGACCCATATATGGTTTATCAGTTTGCTGTATCAGTGTTTAACACTAAATCG
GTTGGACGACGTTCGGAATTTATCCGCATAAAGACGCCAGAGAGCATACCAGGCGCACCT
TCCAACCTTCGGGTTGTTGACAAAACTGCAACATCGCTCATGTTCGACTGGGATTCCCCA
AAAACACCAAACGGCAAAATTACGGGATATGTTCTTACATGCAAAGCTGTCAACAGCACG
AGCGAAGATAGTGAGATTGAACTTCTTGAACCTGGTTTAAAACTGGAAAGTCTTTCGCCG
GCAAAAGTCTACGAAATTACAGTTGCAGCAAAAACAGCAAAAGGTGTGGGGACAGAGAAA
GCTTTAACACAAGTTTCAACCCACCCTGAAGGAGCTCCCGGAAAAGTCAAGTTCAATGCT
ACAGTAGATGAAACCAACGTCACAGTCACGTGGCAAAAACCGGAAGGTTTGCCAGCCGAC
AAATATTTTGTTGAAAGCCGCCGAAGAGATTCTAACGAATGGAATCGGATTGGAACTTAT
TCAAACGAACAGACAGAAAAACCAGTTGCGTTTTCATCATTCGACCCTGTTAGCACTTAT
TATGTGCGGATCGTGGCTGTAAATCCATACGGAGAAAGTACGACAAGTCCAGTTGTGGTG
GAGATTGGAGGAACAGCGATCAATCAAGGATCTATCACCGGCGAAATTTGGTTTATCGTA
ATCATTGCCTTGGTTGTTTTACTGGTCATTGTGTTGGTTCTAATTTGTCTGTTGCGAAAA
AAGCGAGGTGGCAAATATTCAGTGGCTGAAAAAGAGGGTCGACTTGTCGACACTGAATCA
AACGTTTCAAACCGCCAAGAAGTCGGCGAATATAATGACGAGAAAGACGATGAAATAAAG
AAACCACTCGCGCCCAAGGAAACGACCGACATCCCATCAAATGGAGACGCCTCTGCTACG
CCTTCCAACGGTGTACCTCTTTTAGCAGCTCGAACAAGGGGCGACAGCGTTGGTGGTGAT
TCGATCGATGCTTTTGCTGATGCTGAAGCTCGCGAGTTCAACGAAGACGGCTCGTTTATC
GGTCAATACGGCACAATCCCAAGCGAAAGTGTGAGCAACTCCGCAGCGACATCTCCCGGC
GAACAGAACGGCGACGCAGTCTGA
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[15-81] 3.5E-5 - T[93-171] 1.22E-7 - T[201-287] 8.6E-18 - T[295-380] 3.22E-14 - T[393-466] 4.22E-15 - T[477-562] 7.02E-7 |
| SMART |
Ig_sub (IPR003599) - T[22-89] 130.0 - T[98-183] 0.024 - T[202-283] 1.8E-11 - T[295-378] 1.4E-7 - T[389-465] 2.2E-9 - T[475-551] 2.2 |
| Gene3D |
Ig-like_fold (IPR013783) - T[90-189] 1.7E-7 - T[193-284] 1.1E-19 - T[292-379] 6.2E-15 - T[389-464] 9.8E-15 - T[540-656] 6.4E-17 - T[657-754] 9.4E-18 - T[755-849] 1.2E-16 - T[850-946] 2.8E-19 - T[947-1042] 7.4E-13 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[96-174] 7.25 - T[193-283] 12.858 - T[286-376] 10.426 - T[382-459] 10.608 |
| SMART |
Ig_sub2 (IPR003598) - T[104-169] 4.8 - T[208-272] 9.1E-13 - T[301-367] 4.4E-7 - T[395-454] 1.7E-12 |
| Pfam |
Ig_I-set (IPR013098) - T[208-282] 9.4E-14 - T[293-377] 4.6E-9 - T[395-464] 2.0E-10 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[553-745] 1.41E-21 - T[762-949] 9.43E-36 - T[945-1039] 1.59E-13 |
| SMART |
FN3_dom (IPR003961) - T[554-639] 0.25 - T[653-744] 0.13 - T[759-842] 3.8E-7 - T[857-937] 7.6E-12 - T[950-1033] 6.7E-5 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[556-653] 14.343 - T[655-756] 16.197 - T[761-855] 19.148 - T[859-950] 19.022 - T[952-1048] 14.856 |
| CDD |
FN3_dom (IPR003961) - T[571-645] 1.6182E-7 - T[658-741] 1.82253E-5 - T[762-852] 4.61706E-12 - T[857-947] 9.33737E-13 - T[951-1040] 8.02139E-10 |
| Pfam |
FN3_dom (IPR003961) - T[658-744] 1.4E-6 - T[762-845] 1.1E-12 - T[859-939] 2.3E-14 - T[952-1036] 3.2E-8 |
| Pfam |
Neurofascin/L1/NrCAM_C (IPR026966) - T[1079-1185] 9.4E-16 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NRCAM_HUMAN | 30.495 % | 508 | 5.32E-159 |
| NCHL1_HUMAN | 28.84 % | 454 | 1.66E-139 |
| L1CAM_HUMAN | 30.922 % | 491 | 9.27E-153 |