Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S122.g03672.03.t

Possible name(s)

GPD1; GPD1L

Gene model

Phmamm.CG.MTP2014.S122.g03672

Location

S122 [140,864 / 143,832]

Sequences

Amino acid sequence

Length: 350

>Phmamm.CG.MTP2014.S122.g03672.03.p
MGKKVCIIGSGNWGSAIAKIVGDQCAASDEFHTDVHMYVYEEMIKGEKLTEIINTRHENV
KYLPGHKLPQNVIAVPDLVEAGKNADIMIFVVPHQFIRGFCEKLKDHVKPDAIGISLIKG
MDHTKEGLQLISDVIKNILSIDVSVLMGANIASEVADEKFCETTIGCTVDANGQIFKRLL
QTPNFRICVVNDSKTVEICGALKNIVACGAGFVCGLGYGDNTVSAVIRLGLMEMMKFAKA
FFPDNPPQTATFLESCGVADLVTTCYGGRNRRVSQAFVTSKKTIEQLEEEMLGGQKLQGP
QTAQEVYKVMQTLKINEDEYPLFVSVYNIFFNNTPVKNFIECLQKHPEHM

Nucleotide sequence

Length: 1,053

>Phmamm.CG.MTP2014.S122.g03672.03.t
ATGGGTAAAAAAGTATGCATCATTGGATCTGGAAACTGGGGCTCTGCCATAGCAAAAATT
GTTGGTGACCAGTGTGCTGCATCAGATGAATTTCACACTGATGTCCACATGTATGTGTAC
GAAGAAATGATAAAAGGAGAAAAGCTTACAGAAATTATCAACACAAGACATGAAAATGTT
AAATATTTGCCAGGCCACAAGCTTCCACAAAATGTTATTGCTGTCCCAGATTTGGTTGAG
GCTGGAAAAAATGCAGATATTATGATATTTGTTGTTCCTCACCAATTTATCAGAGGATTT
TGTGAAAAACTAAAAGATCATGTTAAACCTGATGCAATTGGAATATCCTTAATCAAAGGT
ATGGATCATACAAAGGAAGGTCTTCAACTTATCAGTGATGTTATCAAAAATATATTATCA
ATTGATGTTAGTGTGTTGATGGGTGCCAACATTGCGTCAGAAGTTGCCGATGAAAAGTTT
TGTGAAACTACCATTGGTTGCACTGTTGATGCCAATGGCCAAATTTTTAAACGCCTTCTG
CAAACTCCAAACTTTCGTATTTGTGTTGTCAATGACTCAAAAACAGTTGAAATTTGTGGT
GCTCTGAAAAACATTGTAGCTTGTGGTGCTGGATTTGTCTGTGGATTGGGATATGGAGAC
AACACTGTTTCCGCTGTTATAAGACTGGGGCTCATGGAAATGATGAAGTTCGCCAAGGCA
TTCTTTCCTGACAATCCACCGCAGACTGCCACATTTCTTGAAAGTTGTGGGGTAGCTGAT
CTTGTAACTACTTGCTATGGTGGCAGAAATCGAAGAGTATCTCAAGCATTTGTGACCAGC
AAAAAGACCATTGAACAACTTGAAGAGGAAATGTTAGGAGGACAAAAGTTACAAGGTCCT
CAAACTGCACAAGAAGTTTATAAAGTGATGCAAACTTTAAAAATAAATGAGGATGAGTAT
CCACTGTTTGTATCAGTCTACAATATTTTTTTCAACAACACTCCAGTGAAGAACTTTATT
GAATGTCTTCAAAAACATCCAGAGCACATGTAA

InterProScan

PIRSF	G3P_DH_NAD-dep (IPR006168) - T[1-350] 4.6E-93
SUPERFAMILY	NAD(P)-bd_dom_sf (IPR036291) - T[3-192] 3.86E-41
Pfam	G3P_DH_NAD-dep_N (IPR011128) - T[4-169] 8.8E-54
TIGRFAM	G3P_DH_NAD-dep_euk (IPR017751) - T[4-343] 1.9E-146
PRINTS	G3P_DH_NAD-dep (IPR006168) - T[7-24] 9.4E-78 - T[69-96] 9.4E-78 - T[145-165] 9.4E-78 - T[185-209] 9.4E-78 - T[210-234] 9.4E-78 - T[254-271] 9.4E-78
SUPERFAMILY	6-PGluconate_DH-like_C_sf (IPR008927) - T[191-348] 6.8E-44
Gene3D	6PGD_dom2 (IPR013328) - T[192-350] 9.0E-64
Pfam	G3P_DH_NAD-dep_C (IPR006109) - T[192-340] 3.7E-44
ProSitePatterns	G3P_DH_NAD-dep (IPR006168) - T[200-221] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
GPD1L_HUMAN	61.561 %	446	8.03E-158
GPDA_HUMAN	66.379 %	470	2.28E-167