- Transcript 'Haaura.CG.MTP2014.S5...' >
- Transcript 'Haaura.CG.MTP2014.S1...' >
- Clone 'cima858494' >
- Transcript 'KH2012:KH.C3.74.v1.C...' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S1240.g14211.01.t
Possible name(s)
ABCF1; ABCF2; ABCF3
Gene model
Location
S1240 [11,435 / 23,220]
Amino acid sequence
Length: 675
>Phmamm.CG.MTP2014.S1240.g14211.01.p
LSSTYILIHIEMPSEAAKRRAQKKKEAAKNRQRPNKKNAESTETNGDTNAEVNGLPLNSL
KIETPNVDKEARSCTGVLASHPISSDLHIYNYSCTYHGQVLFQDTNLELNAGNRYGLIGA
NGCGKSTMLATLGGREVPIPDHIDSFHLQHEAPSSETTPLQFVLECDDERHRLEEEAERI
MQIDPDSDELMKIYERLDELGADTAEVQAARILHGLGFTGEMQQKHLSDFSGGWRMRVSL
ARALFLKPYLLLLDEPTNHLDLDACVWLEEELKKFKHILVLISHSQDFLNGVCTRIIFMN
EKKLHYYTGNYDAFVRTRAELEENQMKRYKKEQDEINHMKDYIARFGHGSAKLARQAQSK
EKTLAKMIEKGLTQKVRTDSSFSFYFPECSPLAPPVLMVQKISFRYSDDTPWIYRDVEFG
VDLDTRLALVGPNGAGKSTLLKLIAGELSPTDGIIRRHSHLKIARYHQHLQDLIDISLTP
VEYMSKCYPEVKDIEQLRKLVGRYGITGKQQLGPISKLSDGQKCRVVFAWLASQYPNMLL
LDEPTNHLDIETIDSLAEAINEFNGGMILVSHDFRLINQVAKDIWVCENQTVTPWEGGIQ
AYKQSLKKKVINQEKKILKGRSADHSKTNGKAAPVSKPVAVSKPKNNIVGFVVPKKSAQN
NSKNAAARDLWDYEN
Nucleotide sequence
Length: 2,786
>Phmamm.CG.MTP2014.S1240.g14211.01.t
CTGTCCTCTACGTACATTCTTATTCATATCGAAATGCCCTCAGAAGCAGCAAAACGCAGG
GCACAGAAGAAGAAAGAAGCAGCAAAAAATCGCCAACGTCCAAACAAGAAAAATGCAGAA
TCAACAGAAACCAATGGCGACACAAATGCCGAAGTCAACGGATTACCTTTGAACTCACTT
AAGATTGAAACCCCTAATGTTGACAAAGAAGCTCGTTCATGCACTGGTGTTCTTGCCTCC
CATCCTATATCATCTGATTTGCACATTTACAACTATTCATGCACTTATCATGGACAGGTG
CTCTTTCAAGACACCAATTTAGAATTGAATGCTGGAAATCGATATGGACTGATTGGAGCA
AACGGATGTGGCAAATCTACTATGTTGGCCACACTTGGTGGCAGGGAAGTGCCCATTCCA
GACCACATTGATAGTTTTCATCTACAACATGAAGCTCCATCAAGCGAAACAACTCCCCTG
CAGTTTGTTTTAGAATGTGATGATGAGCGACATCGATTGGAGGAAGAAGCAGAGAGGATT
ATGCAAATTGATCCTGATAGTGATGAATTAATGAAGATCTACGAAAGGTTGGATGAATTG
GGAGCAGACACAGCTGAAGTTCAAGCTGCAAGAATCCTGCATGGTCTTGGGTTTACTGGT
GAAATGCAACAGAAGCATTTGTCCGACTTTTCTGGTGGTTGGAGGATGAGAGTATCTCTT
GCAAGGGCTCTGTTCCTCAAGCCGTATCTTCTTCTGCTGGATGAACCCACTAATCATCTT
GATCTTGATGCTTGTGTGTGGCTGGAAGAAGAACTTAAAAAGTTCAAGCACATCCTTGTT
CTTATTTCTCATTCTCAGGATTTTCTCAATGGTGTTTGCACAAGAATTATTTTTATGAAT
GAAAAGAAATTGCATTACTATACGGGTAACTATGATGCGTTTGTTCGAACTCGAGCAGAA
TTGGAAGAAAACCAAATGAAACGATACAAGAAAGAGCAGGATGAAATAAATCACATGAAA
GATTACATTGCACGTTTTGGACATGGCAGTGCAAAACTGGCTCGACAAGCACAAAGCAAA
GAAAAGACCTTAGCGAAAATGATTGAGAAAGGTCTTACACAAAAAGTTCGTACAGACAGT
TCCTTTTCTTTTTACTTTCCTGAATGTAGCCCACTTGCGCCTCCAGTGTTAATGGTACAG
AAGATCAGTTTCAGATATTCAGATGATACGCCCTGGATTTATCGTGATGTTGAGTTTGGT
GTTGATTTGGACACTCGCCTTGCATTGGTTGGACCCAATGGAGCTGGAAAATCAACTTTA
CTCAAACTTATTGCAGGAGAGTTAAGCCCAACAGATGGAATTATTCGAAGGCATAGTCAC
TTGAAAATTGCCAGATACCACCAGCATTTGCAAGACCTGATTGATATAAGTCTCACCCCT
GTGGAATACATGTCGAAATGTTATCCTGAGGTGAAGGATATTGAGCAGTTGAGGAAATTA
GTGGGAAGATATGGAATTACTGGAAAACAACAGTTGGGACCAATCAGCAAGCTGTCAGAT
GGACAAAAATGTCGTGTGGTTTTTGCTTGGCTTGCATCCCAATACCCCAACATGTTGTTG
CTGGACGAACCTACCAACCATCTTGACATTGAAACCATTGATTCCCTTGCTGAAGCAATT
AATGAATTCAATGGCGGAATGATCTTGGTGTCTCATGACTTCAGGCTAATAAACCAGGTT
GCGAAGGATATTTGGGTTTGTGAAAACCAAACAGTCACTCCATGGGAAGGAGGAATACAA
GCTTACAAACAATCACTGAAGAAAAAGGTTATAAACCAAGAAAAAAAGATTTTAAAGGGC
AGAAGTGCTGATCACTCAAAAACGAATGGGAAAGCTGCTCCAGTTTCGAAACCAGTAGCT
GTGAGCAAACCAAAAAACAACATCGTTGGTTTTGTGGTACCAAAAAAATCAGCCCAAAAC
AACTCCAAAAATGCTGCTGCTCGAGACTTGTGGGATTATGAAAACTAGTAATGTGACAGG
AAATGTTGACTTTCTACCGCTTAGGAATATTGCTGTTTTCTTTTCCGTCTTATGTATTTA
TTAGGAAATTGTTTTGCTTGCAATTTTACTTACAGGCGCACCCTTTTCGGTTCAAAGATG
GCAGTTGGCCTTTTCCACCAATGTTGACGTCATAGTTTCTGTTGATGACGTTGCTCTGTA
TACCTAAAAGGCAATGTTGCGAAATATTTTCGCAGTTTTTGCTTGAGGCACTTTTGTTAC
TTTTACCAAACTTTGCGATTGGTTTGGCGTTGTACAAAAAAGCCAGAAATGACAACTTTT
TGTCATTCGCTTTTACCTTGCGGGAATATTTTATGGGGATTCGATTTTCTACATTTATTT
GGAAATTTCACGAGCTTATTTTTCCACTATTTTGCAAACTGAAGTCATAAGGTTACTGAG
TGATGTCCCTATTTTATAATAACACAAAGTTTCGTGGCCTGTAATAGGCCTGGCGTACTA
TGTCTATATGGTTTGTTTGTAAGTTTGGTCCCCAAAGTTTAATGCCTTAAGCTAAATTTT
CAGTGTTCGCTTTAGTTTCTGCACCAAATGTCTCATCACATAAGTTGTTTGCTTGATGAT
TTTTTGCGTAGGGGAGTGATAAAACGTTTGGTTTCTTTTCACCATCTTTCTCGTTGATTT
ACTTGTAGGCAATTTTGTTATATTGTCCTGATTTGGGCGACGTGTGGCCAAGTTCTTGTG
TCTATAGGTTTATGTGAGTGCGCTGA
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[77-330] 5.5E-43 - T[378-596] 8.85E-41 |
| ProSiteProfiles |
ABC_transporter-like (IPR003439) - T[87-326] 14.819 - T[397-614] 14.813 |
| Pfam |
ABC_transporter-like (IPR003439) - T[103-258] 2.0E-23 - T[415-546] 5.2E-22 |
| SMART |
AAA+_ATPase (IPR003593) - T[111-308] 1.2E-7 - T[423-591] 2.1E-8 |
| ProSitePatterns |
ABC_transporter_CS (IPR017871) - T[230-244] . |
| Pfam |
ABC_tran_Xtn (IPR032781) - T[299-382] 2.2E-22 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ABCF2_HUMAN | 65.378 % | 816 | 0 |
| ABCF3_HUMAN | 41.199 % | 417 | 6.03E-137 |
| ABCF1_HUMAN | 41.101 % | 366 | 1.1E-115 |