Aniseed - Transcript Card

Transcript 'Phmamm.CG.MTP2014.S9...' >
Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S126.g03743.01.t

Possible name(s)

PARVA; PARVB; PARVG

Gene model

Phmamm.CG.MTP2014.S126.g03743

Location

S126 [4,388 / 9,487]

Sequences

Amino acid sequence

Length: 278

>Phmamm.CG.MTP2014.S126.g03743.01.p
MSFASPWNTWGSLVVDVSDLEQEGRDAIDGGAAPIDYDPSNFHLEENEERSMIDKTSLEE
PKVKELIKVPEVTQTDQGQKDKLQAVLNKVNEQLELQNWDELKWSVDSIHSKNLIAILHL
LVALATHYRAPIRLPEKVNLKVVVVTKREGKLEHKLISEEVTSTMEEMTGGKFERDAFDT
LFDHAPDKLSIVKRSLIEFANRHLEKVNLTVTDLDTQFADGVYLILLMGLLEGYFVPLYS
FSLTPEIFEDKVHNIQFAFELMQDAGLPKPKARPEGLY

Nucleotide sequence

Length: 837

>Phmamm.CG.MTP2014.S126.g03743.01.t
ATGTCGTTCGCATCTCCTTGGAATACTTGGGGAAGTTTGGTCGTCGATGTCAGTGATTTG
GAGCAAGAAGGACGAGATGCCATTGATGGTGGAGCAGCCCCTATTGACTATGATCCAAGC
AACTTTCATTTGGAAGAAAATGAGGAAAGGTCAATGATTGATAAAACTTCATTGGAGGAA
CCGAAAGTCAAAGAATTAATTAAGGTACCTGAAGTAACACAAACAGATCAGGGACAAAAG
GACAAGTTACAAGCTGTTCTCAACAAAGTCAATGAACAACTTGAACTCCAAAATTGGGAT
GAACTAAAATGGAGCGTTGACAGCATCCATTCCAAGAACCTGATTGCTATTCTACACTTG
CTTGTTGCACTTGCCACTCATTATCGGGCACCAATTCGTTTGCCAGAAAAAGTGAATTTA
AAGGTTGTTGTTGTAACAAAGAGGGAGGGAAAGTTGGAACATAAGTTAATCAGCGAAGAA
GTGACTTCTACTATGGAAGAAATGACTGGTGGAAAATTTGAGCGTGATGCTTTTGATACT
CTGTTTGACCATGCTCCTGATAAATTGAGCATTGTGAAGCGTTCACTGATTGAGTTTGCA
AATCGGCATCTGGAAAAAGTCAATCTCACTGTTACTGACCTTGACACACAATTTGCTGAT
GGTGTTTACCTGATTCTGTTGATGGGATTGTTAGAGGGATATTTTGTCCCCTTGTACAGC
TTCAGTTTGACACCTGAAATTTTTGAGGATAAGGTCCACAACATACAGTTTGCATTTGAG
CTGATGCAAGATGCAGGGTTACCAAAACCTAAAGCAAGGCCTGAAGGTTTGTACTGA

InterProScan

PANTHER	Parvin (IPR028433) - T[14-69] 8.4E-113 - T[68-276] 8.4E-113
SUPERFAMILY	CH_dom_sf (IPR036872) - T[40-269] 3.4E-21
Gene3D	CH_dom_sf (IPR036872) - T[169-278] 4.7E-22
ProSiteProfiles	CH-domain (IPR001715) - T[190-278] 14.396
Pfam	CH-domain (IPR001715) - T[193-277] 6.1E-9

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
PARVB_HUMAN	57.049 %	311	6.9E-106
PARVA_HUMAN	52.117 %	300	3.92E-101
PARVG_HUMAN	40.67 %	154	5.52E-45