- Transcript 'KH2012:KH.C3.61.v1.A...' >
- EST 'AHC0AAA229YP20_RM1' >
- Transcript 'KH2012:KH.C3.139.v1....' >
- Transcript 'KH2012:KH.C8.104.v2....' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S127.g03784.02.t
Possible name(s)
DKC1; TRUB1
Gene model
Location
S127 [113,956 / 117,769]
Amino acid sequence
Length: 448
>Phmamm.CG.MTP2014.S127.g03784.02.p
PDLEWLGHDFSTCIWKVFATTCFSLFVMADVVRTGLGESTPKKAKKAKKLKEISDTQRNG
DFFIEPESKPPPKLNTSEWPLLLKNHNLLNIRTNHYTPLPVGCSPLKRNIHDYVRTGFIN
LDKPANPSSHEVVAWLRRILKVDKTGHSGTLDPKVTGCLIVCIARATRLVKSQQSAGKEY
VCIVRLHSAIESELKLARAIETLTGALFQRPPLISAVKRQLRIRTIYESKLLEFDAERHL
GVFWVKCEAGTYIRTLCVHIGLLLGVGGQMQELRRVRSGIVSEEDNMVTMHDVLDAQYQY
DHHKDETYLRRVISPLEKLLLNHKRIILKDSAVNAICYGAKILLPGVLRYEDGIELNQEI
VVITTKGEAICLAIALMTTAVISTCDHGIVAKIKRVIMERDTYPKKWGLGPKATLKKNMI
KQGLLGKFGKPNEKTPQAYIQGNPDFRF
Nucleotide sequence
Length: 1,347
>Phmamm.CG.MTP2014.S127.g03784.02.t
GTCCGGATCTAGAGTGGCTGGGCCATGATTTTTCCACGTGCATTTGGAAAGTTTTTGCAA
CCACGTGTTTCAGTTTGTTCGTGATGGCGGACGTTGTGCGAACTGGTTTGGGAGAAAGCA
CTCCGAAAAAGGCGAAGAAAGCAAAAAAGCTTAAGGAAATTTCGGATACACAAAGGAATG
GAGACTTCTTTATCGAACCAGAAAGTAAACCACCTCCAAAGCTCAACACTTCAGAATGGC
CGCTGTTACTGAAAAATCACAACCTTCTCAATATCAGAACAAATCATTACACTCCGCTGC
CAGTTGGATGTTCACCACTGAAAAGAAATATTCATGATTATGTCCGAACCGGATTTATTA
ATTTGGACAAACCGGCAAATCCTTCCTCCCATGAAGTTGTTGCTTGGTTACGGAGAATTT
TGAAGGTGGACAAAACAGGCCACAGTGGAACCCTTGATCCAAAAGTGACCGGTTGTTTAA
TTGTCTGCATCGCTCGTGCAACAAGACTCGTCAAGTCTCAGCAATCAGCAGGCAAGGAAT
ATGTGTGCATTGTACGTTTACACAGTGCCATCGAAAGTGAGCTCAAATTAGCTCGGGCTA
TCGAAACGCTCACTGGTGCCTTATTCCAAAGGCCACCATTAATATCTGCTGTAAAACGAC
AGCTCCGTATTCGAACAATTTATGAAAGCAAGTTGCTTGAATTTGATGCTGAAAGGCATT
TGGGTGTATTTTGGGTGAAGTGTGAAGCAGGAACTTACATTCGAACTTTATGCGTCCACA
TTGGGTTATTGTTGGGTGTCGGAGGACAAATGCAAGAACTAAGAAGAGTTCGATCAGGAA
TTGTTTCAGAAGAGGACAACATGGTGACAATGCACGATGTCCTGGATGCACAATACCAGT
ACGACCACCACAAAGATGAAACCTACCTCCGACGAGTTATCAGTCCACTTGAAAAACTTC
TCCTTAATCACAAACGCATCATCCTAAAGGACAGTGCGGTAAATGCAATTTGTTATGGAG
CCAAAATCCTTCTTCCTGGGGTTTTAAGGTACGAAGATGGAATCGAGTTAAACCAAGAAA
TCGTTGTCATCACCACAAAGGGAGAAGCAATCTGTTTGGCCATTGCACTAATGACCACTG
CCGTGATTTCTACTTGTGATCATGGGATTGTTGCCAAAATCAAAAGGGTCATCATGGAAA
GGGACACTTACCCCAAAAAGTGGGGTTTAGGACCCAAGGCAACATTAAAAAAGAACATGA
TAAAACAAGGGTTGTTAGGAAAATTTGGAAAACCAAACGAAAAAACGCCACAGGCTTACA
TACAAGGCAATCCTGACTTCAGGTTTG
| PANTHER |
tRNA_PsdUridine_synth_B_fam (IPR004802) - T[41-442] 1.5E-232 |
| SMART |
Dyskerin-like (IPR012960) - T[75-133] 1.7E-31 |
| Pfam |
Dyskerin-like (IPR012960) - T[76-133] 7.9E-30 |
| SUPERFAMILY |
PsdUridine_synth_cat_dom_sf (IPR020103) - T[76-321] 7.67E-77 |
| TIGRFAM |
tRNA_PsdUridine_synth_B_fam (IPR004802) - T[84-408] 3.2E-164 |
| Pfam |
PsdUridine_synth_N (IPR002501) - T[137-253] 3.5E-20 |
| Pfam |
TruB_C (IPR032819) - T[254-320] 1.2E-21 |
| TIGRFAM |
Uncharacterised_CHP00451 (IPR004521) - T[313-393] 1.3E-7 |
| ProSiteProfiles |
PUA (IPR002478) - T[323-398] 17.618 |
| SUPERFAMILY |
PUA-like_sf (IPR015947) - T[323-404] 2.32E-20 |
| SMART |
PUA (IPR002478) - T[324-398] 1.5E-21 |
| Pfam |
PUA (IPR002478) - T[324-397] 9.4E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DKC1_HUMAN | 78.03 % | 635 | 0 |