- Transcript 'Moocul.CG.ELv1_2.S13...' >
- Transcript 'KH2012:KH.L41.13.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S12.g00492.01.t
Possible name(s)
CHD2; CHD3; CHD5
Gene model
Location
S12 [31,380 / 54,541]
Amino acid sequence
Length: 1,938
>Phmamm.CG.MTP2014.S12.g00492.01.p
MEDGGNASQMFEHWQDDNVDDYTDDEVEESLVEKSKKKPKKKDRSKKSKKRKRNDESDTE
LLGISDGNSDAEVEAAMALFEQEDQLDTDEKPKKKRKKEKKKRMSPDVENSPVSVQSTKP
DTKEVKSSAELIQEWNLEPFEYEYTDEDYQNFTSYKLFSQSMKPKLTNRYPRLPATKTLT
IVASLWREFSYSMNVAKLPDDASQTNESSGPSLRQQVLRGPTASVNLLPLAEGKRSRSST
PKATNKKEKRVAPLRIRLPKKKKKGASSEDELSSDNDSDLEFEQTLAAAAQAASDSSSSR
PSSRRSNPRNNKGKKKPPIKKKKLLKANPQDEDGYETDHQDYCDVCKQGGEIILCDGCPR
AFHLVCLEPPLDKPPEGSWPCPVCVKNGVKPKDRSEYRDDDFMLDDEEEEDEENMDDHME
FCSVCKDGGDLLICDTCPHSYHLNCLNPPVAVVPEGEWSCPRCSCPMLKGKLQRVLAWRW
REAPYTEVPDERAGQEGKKKKLWGYKQREFLVKYAEYSFWDVDWITELQMEIYCPHQWRM
YLRRNDMEEPTPLDEDDDWTDKNLIEKYYRYGVQPEWLNIHRILNSRKVGRGPQVQYLVK
WKQLPYDKATWEPEDKDIPGMKEEIQKYKDHRQLMEGGREKSKKKKRKDDRSKPKNDPSE
KYDAQPNFITDLGLSLHEYQLEGLNWLRFSWSQHTDTILADEMGLGKTIQTIVFVKSLVV
ENHTKGPFLISVPLSTMINWEREFDLWAPELYVVSYYGDRDARSVIRENEFSFDDGAIRS
SKMAYRMKSGCQVKFHVLLTSYEMCTIDATTLASVDWAMVCIDEAHRLKNNQSKFFKVLS
DYNVGHKLLLTGTPLQNNLEELFHLLNFLCPAKFTDMNGFLDEFAEIAKEDQVKKLHELL
GPHMLRRLKADVLKGLVAKSEFIVRVNLTPMQRKFYRYILARNFDGLNSRGGPNNSSLLN
IMMDLKKCCNHPYLFNKAAEEAPRSANGAFDGTEMTKNGGKLIVLQKMMRKLKDRGNRVL
IFSQMTRMLDILEDFLEYEGYRYERIDGTITGLVRQEAIDRFNAPNSDHFAFLLSTRAGG
LGINLATADTVFIYDSDWNPHNDIQAFSRAHRIGQTNKVMIYRFVTKNSVEERVAEVAKR
KMMLTHLVVRPGMGSSKTTSMTKQELDDILRFGTEALFKDDDDAEGSNDFIHYDDRAIEA
LLDRSKEGVEAKEKENSQMNEYLSSFKVATYQYTDTHVEPEPEREIIQETMEQPDPNYWE
RLLRHHYEQQQEEIASTLGKGKRVRKQVNYYHAETATEVDRAAGGWDDNGSDYSGLSDTV
EDDDEEFDNTEGRKRGRRDKDRPLPPMLARVGGNIEVLGFTSRQRRTYLNFVMRYGMPPT
ENFQSRWLVRELRGKSEKEFRAYTSLFMRHLCEPGPDNADTYSDGVPREGVSRQHVLTRI
GVMSLIHKKVKEFQAINGDWSLPYMNPIWQNKKVTAAAMAVTANMISRSDTPNSTISSVK
SADSSDTPNSTISSVKSADSSAVPSPAPVVKSQPQDTAAAATDAVKSEATPPAVAKSTDV
TPPEEKASTVDKETPMEVDNPEPTTDEPIKSEKSEVKPPAEEEPNTATDLSTKPASGDSK
TPGTVASAAATSKQDELPLDIVPPKQRFMFNIADGGFTELHTLWQTEEQAAIQSGRINEI
WHRKHDYWLIAGIAGHGYARWTDIQNEGRFAIVNEPFRAMHEKGNFLEMQNKFLARRYKL
LEQALVIEEQLRRASYLGLMQDPKHPSMALNGRFAEVECLAESHQHLSKESLAGNKPANA
VLHKVLNQLEELLADMKADVGRLPATLSRIPSVASRLKMSERGILSRLTQQNGDQQIQPC
SYPPYHKMLNGPFCSGRPVSESRRLVGKSGDTTEVTQDPGSPAPSTSNPGAVRAAAAILA
VANAQAMSSDRTVITIDD
Nucleotide sequence
Length: 5,817
>Phmamm.CG.MTP2014.S12.g00492.01.t
ATGGAGGACGGAGGAAACGCAAGTCAAATGTTCGAACATTGGCAAGACGATAATGTAGAT
GATTATACAGATGATGAAGTGGAAGAAAGCTTAGTTGAAAAATCAAAAAAGAAACCTAAA
AAGAAAGACAGAAGCAAGAAATCAAAGAAGCGTAAAAGAAACGATGAAAGTGATACCGAG
TTGCTTGGAATATCAGATGGTAACAGTGATGCAGAAGTTGAAGCCGCAATGGCTCTGTTC
GAGCAAGAAGATCAACTTGATACTGATGAAAAGCCAAAGAAGAAACGCAAGAAGGAGAAA
AAGAAACGAATGTCACCTGATGTTGAAAATTCACCTGTTTCAGTACAAAGCACCAAACCT
GACACAAAAGAAGTGAAATCATCTGCAGAACTGATCCAGGAATGGAACTTAGAACCATTT
GAATATGAATATACTGATGAAGACTACCAGAATTTTACCAGCTACAAACTCTTCAGTCAA
AGCATGAAGCCGAAACTAACTAATCGATACCCAAGGCTGCCAGCCACAAAAACACTGACA
ATTGTAGCTTCGCTTTGGCGAGAGTTTTCATACTCAATGAATGTGGCAAAATTGCCAGAT
GATGCTAGTCAAACTAATGAAAGCAGTGGTCCATCATTAAGACAACAAGTACTTCGTGGG
CCCACAGCATCTGTAAACCTTTTACCACTTGCGGAGGGAAAAAGAAGTCGAAGTAGCACC
CCTAAAGCCACCAACAAGAAAGAAAAGAGAGTGGCACCTTTGAGAATCCGTCTTCCCAAG
AAGAAGAAAAAGGGGGCCTCTAGTGAAGATGAGTTGTCATCTGACAATGATTCTGACCTC
GAATTTGAGCAAACACTGGCAGCTGCAGCTCAAGCTGCGAGTGACAGCTCATCTAGTCGA
CCTTCTTCGAGAAGAAGCAATCCGAGAAACAACAAGGGAAAAAAGAAACCACCTATAAAG
AAAAAGAAGCTACTAAAAGCAAATCCACAAGATGAAGATGGGTATGAAACTGATCACCAA
GATTACTGTGACGTTTGTAAACAAGGTGGTGAGATTATACTTTGTGATGGATGCCCAAGA
GCATTTCATCTTGTCTGTCTGGAGCCACCTCTGGATAAACCTCCGGAAGGAAGCTGGCCA
TGTCCTGTTTGCGTAAAAAATGGAGTAAAACCTAAAGACAGAAGTGAATATCGCGACGAT
GATTTTATGCTTGATGATGAAGAGGAAGAAGATGAAGAAAACATGGATGATCACATGGAG
TTCTGTTCTGTGTGCAAAGATGGTGGTGATCTGCTCATATGTGATACCTGCCCACATTCT
TACCATCTTAACTGCCTCAACCCTCCTGTTGCTGTTGTGCCTGAAGGAGAGTGGTCATGT
CCCAGATGTTCGTGCCCCATGCTCAAAGGCAAACTGCAGAGGGTGTTGGCATGGAGATGG
AGAGAGGCACCTTACACAGAGGTGCCTGATGAGAGGGCTGGTCAGGAAGGCAAAAAGAAG
AAGCTGTGGGGTTACAAGCAACGGGAGTTCTTAGTGAAATATGCAGAATATTCTTTTTGG
GATGTTGATTGGATCACAGAACTCCAAATGGAAATTTACTGCCCTCATCAGTGGAGAATG
TATTTAAGACGAAATGACATGGAAGAGCCAACTCCATTAGATGAAGATGATGACTGGACA
GACAAAAACCTCATCGAGAAATATTATAGATATGGAGTGCAACCTGAGTGGTTGAACATT
CATCGCATTCTTAACAGCAGAAAAGTTGGCCGGGGTCCTCAGGTTCAGTATTTAGTCAAA
TGGAAACAGTTGCCGTATGACAAAGCAACCTGGGAACCAGAAGACAAAGATATTCCAGGG
ATGAAGGAAGAAATTCAAAAATATAAAGATCACAGGCAACTAATGGAAGGCGGACGCGAA
AAGAGCAAAAAGAAAAAGAGGAAGGACGACCGCAGCAAGCCCAAGAATGACCCGTCCGAA
AAGTACGATGCCCAACCGAATTTTATAACCGATCTTGGACTTTCCCTGCACGAATATCAG
CTTGAAGGTCTCAATTGGCTGCGGTTTTCATGGTCTCAGCACACGGACACAATCCTCGCC
GATGAAATGGGCTTGGGCAAAACTATTCAGACGATCGTCTTTGTAAAGTCTCTTGTTGTG
GAGAACCATACTAAAGGTCCATTTTTGATATCTGTTCCCTTGTCCACGATGATCAACTGG
GAAAGAGAATTCGATCTTTGGGCTCCAGAACTCTATGTTGTATCGTACTACGGTGATAGG
GACGCAAGATCTGTAATCCGTGAAAACGAGTTTTCATTTGATGATGGCGCCATTCGTTCC
AGCAAAATGGCGTATAGAATGAAGAGCGGATGCCAAGTCAAGTTTCACGTGTTGCTGACG
TCATATGAGATGTGCACCATCGACGCTACGACTTTGGCTTCCGTGGATTGGGCGATGGTC
TGCATAGACGAGGCCCACAGACTGAAAAACAACCAGTCCAAGTTTTTCAAGGTGCTGTCT
GATTACAATGTTGGCCACAAGCTGCTACTTACTGGAACGCCACTGCAGAACAATCTAGAA
GAATTGTTCCATCTGCTAAATTTCCTCTGCCCAGCGAAGTTCACTGACATGAACGGATTC
TTGGATGAGTTTGCTGAGATTGCCAAAGAAGACCAAGTCAAGAAGCTTCACGAATTGCTC
GGTCCACATATGTTGCGTCGACTTAAGGCTGATGTGCTGAAGGGATTGGTCGCAAAAAGT
GAGTTTATTGTTCGAGTCAACCTCACACCGATGCAGCGTAAGTTTTACCGATATATCCTT
GCCCGAAACTTTGACGGCCTCAACTCTCGTGGTGGTCCAAACAATTCATCCCTACTCAAT
ATTATGATGGACCTCAAGAAATGTTGCAATCATCCGTATTTATTCAACAAAGCTGCCGAG
GAAGCACCACGATCAGCTAATGGTGCCTTCGACGGTACTGAGATGACAAAGAATGGTGGA
AAGTTGATCGTTCTGCAGAAGATGATGCGAAAGTTAAAGGACAGGGGAAACAGAGTTCTT
ATATTTTCGCAGATGACACGCATGTTAGACATCTTGGAAGATTTTCTCGAATACGAAGGA
TACAGATATGAGAGAATTGACGGAACCATTACAGGTTTAGTGCGGCAAGAAGCAATTGAT
CGTTTTAACGCTCCGAACTCCGATCATTTCGCTTTCTTGCTTTCAACTCGTGCTGGAGGT
TTGGGAATCAACTTGGCCACAGCCGACACAGTGTTTATATATGACAGTGATTGGAATCCA
CACAACGACATCCAGGCCTTCAGTAGAGCGCATAGAATCGGTCAGACCAATAAAGTTATG
ATCTATCGGTTTGTCACCAAGAACTCGGTCGAAGAAAGAGTAGCTGAGGTTGCTAAGCGG
AAAATGATGCTGACTCATCTTGTGGTGCGTCCGGGCATGGGATCTTCCAAAACCACGAGC
ATGACGAAGCAGGAATTGGACGACATTCTACGATTCGGCACCGAAGCACTATTTAAAGAC
GATGACGACGCCGAAGGTAGCAACGATTTTATTCATTACGACGACCGCGCTATCGAAGCT
TTGCTCGATCGTAGCAAGGAGGGTGTCGAGGCGAAAGAAAAAGAAAACTCACAAATGAAC
GAATACCTCAGCTCTTTCAAAGTCGCCACATACCAATACACCGATACACACGTCGAGCCT
GAACCGGAGCGAGAAATCATCCAAGAGACGATGGAACAACCTGATCCCAATTACTGGGAG
CGACTGTTACGTCACCATTACGAGCAACAACAAGAAGAAATCGCGTCCACCCTGGGCAAG
GGAAAACGAGTCCGAAAACAGGTCAACTATTATCATGCTGAGACTGCTACCGAAGTAGAC
CGAGCAGCTGGCGGGTGGGATGACAATGGTAGTGATTACAGTGGATTAAGTGACACGGTT
GAAGACGATGACGAAGAGTTCGATAACACCGAAGGTCGAAAACGCGGTCGACGAGACAAG
GACCGACCTTTGCCCCCGATGTTGGCCAGAGTCGGTGGAAACATTGAGGTTCTCGGTTTT
ACGTCGAGACAACGTCGTACTTATCTAAATTTCGTGATGAGATACGGAATGCCACCGACG
GAAAACTTCCAAAGCCGATGGTTGGTGAGGGAACTAAGAGGAAAATCAGAGAAAGAATTC
AGGGCGTACACATCTTTATTTATGCGACATTTGTGTGAGCCTGGTCCTGACAATGCGGAT
ACATATTCAGACGGTGTACCACGAGAGGGCGTATCACGACAACATGTCCTCACACGTATT
GGCGTTATGTCTCTTATACATAAGAAGGTGAAAGAGTTCCAAGCGATCAACGGTGACTGG
AGTCTTCCATACATGAACCCGATTTGGCAGAACAAGAAAGTCACCGCAGCCGCTATGGCC
GTTACAGCTAATATGATATCGCGATCTGATACCCCGAATTCAACAATATCGTCGGTTAAG
TCGGCCGACTCATCNGATACCCCGAATTCAACAATATCGTCGGTTAAGTCGGCCGACTCA
TCGGCTGTGCCGTCTCCAGCCCCCGTTGTCAAGTCTCAACCACAAGACACGGCCGCCGCT
GCCACTGATGCAGTAAAGTCTGAAGCAACTCCTCCAGCAGTAGCAAAATCCACTGATGTC
ACACCACCAGAAGAGAAAGCATCAACTGTTGACAAAGAAACTCCAATGGAAGTAGATAAT
CCTGAACCCACTACAGATGAGCCGATAAAATCTGAAAAGAGTGAGGTTAAGCCACCTGCA
GAAGAAGAACCTAACACTGCTACCGACCTGTCAACTAAACCGGCAAGTGGCGACTCGAAA
ACTCCTGGAACAGTTGCATCAGCAGCAGCTACATCCAAACAAGATGAGCTACCACTGGAC
ATTGTTCCACCAAAACAACGGTTTATGTTCAACATCGCAGATGGAGGTTTCACTGAGCTT
CATACTCTTTGGCAAACTGAAGAGCAAGCTGCTATTCAGTCCGGACGAATCAACGAGATA
TGGCATCGGAAACATGATTACTGGCTCATTGCCGGTATTGCTGGTCACGGCTACGCGCGC
TGGACCGACATTCAGAACGAAGGCAGGTTCGCTATTGTCAATGAACCATTTCGTGCGATG
CATGAGAAAGGAAACTTTCTTGAGATGCAGAACAAGTTCCTTGCTCGAAGATATAAGCTG
CTCGAACAAGCCTTGGTTATTGAGGAACAACTTCGTCGTGCTTCGTATCTTGGACTGATG
CAAGATCCTAAACACCCGTCAATGGCTCTTAATGGAAGGTTCGCCGAAGTAGAATGTTTG
GCTGAGAGTCACCAGCATCTATCAAAGGAGTCTTTGGCTGGCAACAAACCCGCTAACGCC
GTCTTACATAAAGTTTTGAACCAGTTAGAGGAGTTGCTTGCTGACATGAAGGCCGATGTG
GGTCGTCTACCTGCAACTTTATCGCGTATTCCGTCGGTGGCGTCGCGTCTGAAGATGTCT
GAACGCGGGATCCTGAGTCGTCTCACACAACAGAATGGCGATCAACAGATTCAGCCTTGC
AGCTATCCACCCTACCACAAGATGCTGAACGGACCTTTTTGCTCTGGTCGCCCGGTCTCA
GAAAGCAGGCGACTCGTCGGCAAGTCCGGCGACACGACTGAAGTGACCCAAGACCCAGGC
TCTCCAGCCCCATCGACGAGCAACCCGGGTGCTGTAAGGGCCGCGGCCGCCATCTTGGCA
GTCGCTAACGCCCAAGCTATGAGCAGCGATCGAACAGTCATCACCATCGACGACTGA
| Pfam |
CHD_N (IPR012958) - T[141-193] 2.4E-17 |
| SUPERFAMILY |
Znf_FYVE_PHD (IPR011011) - T[330-389] 4.87E-17 - T[415-480] 8.38E-17 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[332-390] 2.6E-19 - T[412-471] 4.1E-19 |
| ProSiteProfiles |
Znf_PHD-finger (IPR019787) - T[340-387] 10.602 - T[419-466] 10.416 |
| SMART |
Znf_PHD (IPR001965) - T[342-385] 4.3E-13 - T[421-464] 3.0E-14 |
| Pfam |
Znf_PHD-finger (IPR019787) - T[342-385] 1.8E-10 - T[421-465] 4.8E-10 |
| ProSitePatterns |
Zinc_finger_PHD-type_CS (IPR019786) - T[343-384] . - T[422-463] . |
| SMART |
Znf_RING (IPR001841) - T[343-384] 0.36 - T[422-463] 0.023 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[422-464] 8.904 |
| SMART |
Chromo/chromo_shadow_dom (IPR000953) - T[469-546] 0.95 - T[576-633] 4.5E-12 |
| SUPERFAMILY |
Chromo-like_dom_sf (IPR016197) - T[471-547] 4.29E-6 - T[561-632] 1.21E-15 |
| CDD |
Chromo/chromo_shadow_dom (IPR000953) - T[575-631] 3.33596E-12 |
| ProSiteProfiles |
Chromo/chromo_shadow_dom (IPR000953) - T[578-640] 11.472 |
| Pfam |
Chromo_domain (IPR023780) - T[580-631] 1.7E-13 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[655-907] 1.38E-50 - T[909-1182] 1.19E-68 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[672-884] 1.5E-29 |
| Gene3D |
SNF2-like_sf (IPR038718) - T[673-916] 5.9E-192 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[688-872] 21.525 |
| Pfam |
SNF2_N (IPR000330) - T[692-974] 7.5E-60 |
| CDD |
Helicase_C (IPR001650) - T[997-1122] 2.66236E-30 |
| Pfam |
Helicase_C (IPR001650) - T[1004-1114] 1.5E-19 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[1004-1167] 19.94 |
| SMART |
Helicase_C (IPR001650) - T[1030-1114] 1.4E-24 |
| SMART |
DUF1087 (IPR009463) - T[1233-1298] 6.2E-32 |
| Pfam |
DUF1087 (IPR009463) - T[1239-1295] 1.8E-24 |
| SMART |
DUF1086 (IPR009462) - T[1317-1467] 7.5E-92 |
| Pfam |
DUF1086 (IPR009462) - T[1329-1463] 4.0E-56 |
| Pfam |
CHD_C2 (IPR012957) - T[1678-1848] 1.0E-81 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CHD3_HUMAN | 55.855 % | 1827 | 0 |
| CHD5_HUMAN | 57.533 % | 1776 | 0 |
| CHD2_HUMAN | 44.545 % | 532 | 8.25E-158 |