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  1. Transcript 'KH2012:KH.C6.158.v1....'
  2. Transcript 'KH2012:KH.L40.23.v1....'
  3. Transcript 'KH2012:KH.C3.798.v1....'
  4. Transcript 'KH2012:KH.C1.755.v1....'
  5. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S12.g00492.02.t

Possible name(s)

CHD2; CHD3; CHD5

Location

S12 [36,929 / 54,643]

Sequences

Amino acid sequence

Length: 1,450

>Phmamm.CG.MTP2014.S12.g00492.02.p
MEDGGNASQMFEHWQDDNVDDYTDDEVEESLVEKSKKKPKKKDRSKKSKKRKRNDESDTE
LLGISDGNSDAEVEAAMALFEQEDQLDTDEKPKKKRKKEKKKRMSPDVENSPVSVQSTKP
DTKEVKSSAELIQEWNLEPFEYEYTDEDYQNFTSYKLFSQSMKPKLTNRYPRLPATKTLT
IVASLWREFSYSMNVAKLPDDASQTNESSGPSLRQQVLRGPTASVNLLPLAEGKRSRSST
PKATNKKEKRVAPLRIRLPKKKKKGASSEDELSSDNDSDLEFEQTLAAAAQAASDSSSSR
PSSRRSNPRNNKGKKKPPIKKKKLLKANPQDEDGYETDHQDYCDVCKQGGEIILCDGCPR
AFHLVCLEPPLDKPPEGSWPCPVCVKNGVKPKDRSEYRDDDFMLDDEEEEDEENMDDHME
FCSVCKDGGDLLICDTCPHSYHLNCLNPPVAVVPEGEWSCPRCSCPMLKGKLQRVLAWRW
REAPYTEVPDERAGQEGKKKKLWGYKQREFLVKYAEYSFWDVDWITELQMEIYCPHQWRM
YLRRNDMEEPTPLDEDDDWTDKNLIEKYYRYGVQPEWLNIHRILNSRKVGRGPQVQYLVK
WKQLPYDKATWEPEDKDIPGMKEEIQKYKDHRQLMEGGREKSKKKKRKDDRSKPKNDPSE
KYDAQPNFITDLGLSLHEYQLEGLNWLRFSWSQHTDTILADEMGLGKTIQTIVFVKSLVV
ENHTKGPFLISVPLSTMINWEREFDLWAPELYVVSYYGDRDARSVIRENEFSFDDGAIRS
SKMAYRMKSGCQVKFHVLLTSYEMCTIDATTLASVDWAMVCIDEAHRLKNNQSKFFKVLS
DYNVGHKLLLTGTPLQNNLEELFHLLNFLCPAKFTDMNGFLDEFAEIAKEDQVKKLHELL
GPHMLRRLKADVLKGLVAKSEFIVRVNLTPMQRKFYRYILARNFDGLNSRGGPNNSSLLN
IMMDLKKCCNHPYLFNKAAEEAPRSANGAFDGTEMTKNGGKLIVLQKMMRKLKDRGNRVL
IFSQMTRMLDILEDFLEYEGYRYERIDGTITGLVRQEAIDRFNAPNSDHFAFLLSTRAGG
LGINLATADTVFIYDSDWNPHNDIQAFSRAHRIGQTNKVMIYRFVTKNSVEERVAEVAKR
KMMLTHLVVRPGMGSSKTTSMTKQELDDILRFGTEALFKDDDDAEGSNDFIHYDDRAIEA
LLDRSKEGVEAKEKENSQMNEYLSSFKVATYQYTDTHVEPEPEREIIQETMEQPDPNYWE
RLLRHHYEQQQEEIASTLGKGKRVRKQVNYYHAETATEVDRAAGGWDDNGSDYSGLSDTV
EDDDEEFDNTEGRKRGRRDKDRPLPPMLARVGGNIEVLGFTSRQRRTYLNFVMRYGMPPT
ENFQSRWLVRELRGKSEKEFRAYTSLFMRHLCEPGPDNADTYSDGVPREGVSRQHVLTRI
GVMSLIHKKV

Nucleotide sequence

Length: 4,453

>Phmamm.CG.MTP2014.S12.g00492.02.t
ATGGCGCCCATTGACGTGGAACGTAGAGAATAACTGATCGTCATTTTAATCAGCAAACGC
AAAGGCGCTTAACTACAGTTTGTATTACGACCGCGGATAGTCATGGAGGACGGAGGAAAC
GCAAGTCAAATGTTCGAACATTGGCAAGACGATAATGTAGATGATTATACAGATGATGAA
GTGGAAGAAAGCTTAGTTGAAAAATCAAAAAAGAAACCTAAAAAGAAAGACAGAAGCAAG
AAATCAAAGAAGCGTAAAAGAAACGATGAAAGTGATACCGAGTTGCTTGGAATATCAGAT
GGTAACAGTGATGCAGAAGTTGAAGCCGCAATGGCTCTGTTCGAGCAAGAAGATCAACTT
GATACTGATGAAAAGCCAAAGAAGAAACGCAAGAAGGAGAAAAAGAAACGAATGTCACCT
GATGTTGAAAATTCACCTGTTTCAGTACAAAGCACCAAACCTGACACAAAAGAAGTGAAA
TCATCTGCAGAACTGATCCAGGAATGGAACTTAGAACCATTTGAATATGAATATACTGAT
GAAGACTACCAGAATTTTACCAGCTACAAACTCTTCAGTCAAAGCATGAAGCCGAAACTA
ACTAATCGATACCCAAGGCTGCCAGCCACAAAAACACTGACAATTGTAGCTTCGCTTTGG
CGAGAGTTTTCATACTCAATGAATGTGGCAAAATTGCCAGATGATGCTAGTCAAACTAAT
GAAAGCAGTGGTCCATCATTAAGACAACAAGTACTTCGTGGGCCCACAGCATCTGTAAAC
CTTTTACCACTTGCGGAGGGAAAAAGAAGTCGAAGTAGCACCCCTAAAGCCACCAACAAG
AAAGAAAAGAGAGTGGCACCTTTGAGAATCCGTCTTCCCAAGAAGAAGAAAAAGGGGGCC
TCTAGTGAAGATGAGTTGTCATCTGACAATGATTCTGACCTCGAATTTGAGCAAACACTG
GCAGCTGCAGCTCAAGCTGCGAGTGACAGCTCATCTAGTCGACCTTCTTCGAGAAGAAGC
AATCCGAGAAACAACAAGGGAAAAAAGAAACCACCTATAAAGAAAAAGAAGCTACTAAAA
GCAAATCCACAAGATGAAGATGGGTATGAAACTGATCACCAAGATTACTGTGACGTTTGT
AAACAAGGTGGTGAGATTATACTTTGTGATGGATGCCCAAGAGCATTTCATCTTGTCTGT
CTGGAGCCACCTCTGGATAAACCTCCGGAAGGAAGCTGGCCATGTCCTGTTTGCGTAAAA
AATGGAGTAAAACCTAAAGACAGAAGTGAATATCGCGACGATGATTTTATGCTTGATGAT
GAAGAGGAAGAAGATGAAGAAAACATGGATGATCACATGGAGTTCTGTTCTGTGTGCAAA
GATGGTGGTGATCTGCTCATATGTGATACCTGCCCACATTCTTACCATCTTAACTGCCTC
AACCCTCCTGTTGCTGTTGTGCCTGAAGGAGAGTGGTCATGTCCCAGATGTTCGTGCCCC
ATGCTCAAAGGCAAACTGCAGAGGGTGTTGGCATGGAGATGGAGAGAGGCACCTTACACA
GAGGTGCCTGATGAGAGGGCTGGTCAGGAAGGCAAAAAGAAGAAGCTGTGGGGTTACAAG
CAACGGGAGTTCTTAGTGAAATATGCAGAATATTCTTTTTGGGATGTTGATTGGATCACA
GAACTCCAAATGGAAATTTACTGCCCTCATCAGTGGAGAATGTATTTAAGACGAAATGAC
ATGGAAGAGCCAACTCCATTAGATGAAGATGATGACTGGACAGACAAAAACCTCATCGAG
AAATATTATAGATATGGAGTGCAACCTGAGTGGTTGAACATTCATCGCATTCTTAACAGC
AGAAAAGTTGGCCGGGGTCCTCAGGTTCAGTATTTAGTCAAATGGAAACAGTTGCCGTAT
GACAAAGCAACCTGGGAACCAGAAGACAAAGATATTCCAGGGATGAAGGAAGAAATTCAA
AAATATAAAGATCACAGGCAACTAATGGAAGGCGGACGCGAAAAGAGCAAAAAGAAAAAG
AGGAAGGACGACCGCAGCAAGCCCAAGAATGACCCGTCCGAAAAGTACGATGCCCAACCG
AATTTTATAACCGATCTTGGACTTTCCCTGCACGAATATCAGCTTGAAGGTCTCAATTGG
CTGCGGTTTTCATGGTCTCAGCACACGGACACAATCCTCGCCGATGAAATGGGCTTGGGC
AAAACTATTCAGACGATCGTCTTTGTAAAGTCTCTTGTTGTGGAGAACCATACTAAAGGT
CCATTTTTGATATCTGTTCCCTTGTCCACGATGATCAACTGGGAAAGAGAATTCGATCTT
TGGGCTCCAGAACTCTATGTTGTATCGTACTACGGTGATAGGGACGCAAGATCTGTAATC
CGTGAAAACGAGTTTTCATTTGATGATGGCGCCATTCGTTCCAGCAAAATGGCGTATAGA
ATGAAGAGCGGATGCCAAGTCAAGTTTCACGTGTTGCTGACGTCATATGAGATGTGCACC
ATCGACGCTACGACTTTGGCTTCCGTGGATTGGGCGATGGTCTGCATAGACGAGGCCCAC
AGACTGAAAAACAACCAGTCCAAGTTTTTCAAGGTGCTGTCTGATTACAATGTTGGCCAC
AAGCTGCTACTTACTGGAACGCCACTGCAGAACAATCTAGAAGAATTGTTCCATCTGCTA
AATTTCCTCTGCCCAGCGAAGTTCACTGACATGAACGGATTCTTGGATGAGTTTGCTGAG
ATTGCCAAAGAAGACCAAGTCAAGAAGCTTCACGAATTGCTCGGTCCACATATGTTGCGT
CGACTTAAGGCTGATGTGCTGAAGGGATTGGTCGCAAAAAGTGAGTTTATTGTTCGAGTC
AACCTCACACCGATGCAGCGTAAGTTTTACCGATATATCCTTGCCCGAAACTTTGACGGC
CTCAACTCTCGTGGTGGTCCAAACAATTCATCCCTACTCAATATTATGATGGACCTCAAG
AAATGTTGCAATCATCCGTATTTATTCAACAAAGCTGCCGAGGAAGCACCACGATCAGCT
AATGGTGCCTTCGACGGTACTGAGATGACAAAGAATGGTGGAAAGTTGATCGTTCTGCAG
AAGATGATGCGAAAGTTAAAGGACAGGGGAAACAGAGTTCTTATATTTTCGCAGATGACA
CGCATGTTAGACATCTTGGAAGATTTTCTCGAATACGAAGGATACAGATATGAGAGAATT
GACGGAACCATTACAGGTTTAGTGCGGCAAGAAGCAATTGATCGTTTTAACGCTCCGAAC
TCCGATCATTTCGCTTTCTTGCTTTCAACTCGTGCTGGAGGTTTGGGAATCAACTTGGCC
ACAGCCGACACAGTGTTTATATATGACAGTGATTGGAATCCACACAACGACATCCAGGCC
TTCAGTAGAGCGCATAGAATCGGTCAGACCAATAAAGTTATGATCTATCGGTTTGTCACC
AAGAACTCGGTCGAAGAAAGAGTAGCTGAGGTTGCTAAGCGGAAAATGATGCTGACTCAT
CTTGTGGTGCGTCCGGGCATGGGATCTTCCAAAACCACGAGCATGACGAAGCAGGAATTG
GACGACATTCTACGATTCGGCACCGAAGCACTATTTAAAGACGATGACGACGCCGAAGGT
AGCAACGATTTTATTCATTACGACGACCGCGCTATCGAAGCTTTGCTCGATCGTAGCAAG
GAGGGTGTCGAGGCGAAAGAAAAAGAAAACTCACAAATGAACGAATACCTCAGCTCTTTC
AAAGTCGCCACATACCAATACACCGATACACACGTCGAGCCTGAACCGGAGCGAGAAATC
ATCCAAGAGACGATGGAACAACCTGATCCCAATTACTGGGAGCGACTGTTACGTCACCAT
TACGAGCAACAACAAGAAGAAATCGCGTCCACCCTGGGCAAGGGAAAACGAGTCCGAAAA
CAGGTCAACTATTATCATGCTGAGACTGCTACCGAAGTAGACCGAGCAGCTGGCGGGTGG
GATGACAATGGTAGTGATTACAGTGGATTAAGTGACACGGTTGAAGACGATGACGAAGAG
TTCGATAACACCGAAGGTCGAAAACGCGGTCGACGAGACAAGGACCGACCTTTGCCCCCG
ATGTTGGCCAGAGTCGGTGGAAACATTGAGGTTCTCGGTTTTACGTCGAGACAACGTCGT
ACTTATCTAAATTTCGTGATGAGATACGGAATGCCACCGACGGAAAACTTCCAAAGCCGA
TGGTTGGTGAGGGAACTAAGAGGAAAATCAGAGAAAGAATTCAGGGCGTACACATCTTTA
TTTATGCGACATTTGTGTGAGCCTGGTCCTGACAATGCGGATACATATTCAGACGGTGTA
CCACGAGAGGGCGTATCACGACAACATGTCCTCACACGTATTGGCGTTATGTCTCTTATA
CATAAGAAGGTGG

InterProScan

PANTHER
CHD3 (IPR028722) - T[114-203] 0.0 - T[233-1450] 0.0
Pfam
CHD_N (IPR012958) - T[141-193] 1.7E-17
SUPERFAMILY
Znf_FYVE_PHD (IPR011011) - T[330-389] 3.54E-17 - T[415-480] 6.02E-17
Gene3D
Znf_RING/FYVE/PHD (IPR013083) - T[332-390] 1.9E-19 - T[412-471] 2.9E-19
ProSiteProfiles
Znf_PHD-finger (IPR019787) - T[340-387] 10.602 - T[419-466] 10.416
SMART
Znf_PHD (IPR001965) - T[342-385] 4.3E-13 - T[421-464] 3.0E-14
Pfam
Znf_PHD-finger (IPR019787) - T[342-385] 1.3E-10 - T[421-465] 3.5E-10
SMART
Znf_RING (IPR001841) - T[343-384] 0.36 - T[422-463] 0.023
ProSitePatterns
Zinc_finger_PHD-type_CS (IPR019786) - T[343-384] . - T[422-463] .
ProSiteProfiles
Znf_RING (IPR001841) - T[422-464] 8.904
SMART
Chromo/chromo_shadow_dom (IPR000953) - T[469-546] 0.95 - T[576-633] 4.5E-12
SUPERFAMILY
Chromo-like_dom_sf (IPR016197) - T[471-547] 3.02E-6 - T[561-632] 8.61E-16
ProSiteProfiles
Chromo/chromo_shadow_dom (IPR000953) - T[578-640] 11.472
Pfam
Chromo_domain (IPR023780) - T[580-631] 1.2E-13
CDD
Chromo/chromo_shadow_dom (IPR000953) - T[580-631] 8.96963E-12
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[655-907] 8.06E-51 - T[909-1182] 7.39E-69
SMART
Helicase_ATP-bd (IPR014001) - T[672-884] 1.5E-29
Gene3D
SNF2-like_sf (IPR038718) - T[673-916] 3.5E-192
ProSiteProfiles
Helicase_ATP-bd (IPR014001) - T[688-872] 21.525
Pfam
SNF2_N (IPR000330) - T[692-974] 5.1E-60
CDD
Helicase_C (IPR001650) - T[997-1122] 1.96644E-30
Pfam
Helicase_C (IPR001650) - T[1004-1114] 1.0E-19
ProSiteProfiles
Helicase_C (IPR001650) - T[1004-1167] 19.94
SMART
Helicase_C (IPR001650) - T[1030-1114] 1.4E-24
SMART
DUF1087 (IPR009463) - T[1233-1298] 6.2E-32
Pfam
DUF1087 (IPR009463) - T[1239-1295] 1.3E-24
SMART
DUF1086 (IPR009462) - T[1317-1450] 1.2E-74
Pfam
DUF1086 (IPR009462) - T[1329-1450] 2.1E-51

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CHD3_HUMAN 55.047 % 1484 0
CHD5_HUMAN 60.502 % 1431 0
CHD2_HUMAN 44.545 % 530 9.37E-161





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