- Transcript 'KH2012:KH.C6.132.v5....' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.C6.105.v1....' >
- Transcript 'Haaura.CG.MTP2014.S7...' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S12.g00492.03.t
Possible name(s)
CHD2; CHD3; CHD5
Gene model
Location
S12 [49,788 / 53,410]
Amino acid sequence
Length: 428
>Phmamm.CG.MTP2014.S12.g00492.03.p
QSMKPKLTNRYPRLPATKTLTIVASLWREFSYSMNVAKLPDDASQTNESSGPSLRQQVLR
GPTASVNLLPLAEGKRSRSSTPKATNKKEKRVAPLRIRLPKKKKKGASSEDELSSDNDSD
LEFEQTLAAAAQAASDSSSSRPSSRRSNPRNNKGKKKPPIKKKKLLKANPQDEDGYETDH
QDYCDVCKQGGEIILCDGCPRAFHLVCLEPPLDKPPEGSWPCPVCVKNGVKPKDRSEYRD
DDFMLDDEEEEDEENMDDHMEFCSVCKDGGDLLICDTCPHSYHLNCLNPPVAVVPEGEWS
CPRCSCPMLKGKLQRVLAWRWREAPYTEVPDERAGQEGKKKKLWGYKQREFLVKYAEYSF
WDVDWITELQMEIYCPHQWRMYLRRNDMEEPTPLDEDDDWTDKNLIEKYYRYGVQPEWLN
IHRILNSR
Nucleotide sequence
Length: 1,286
>Phmamm.CG.MTP2014.S12.g00492.03.t
GTCAAAGCATGAAGCCGAAACTAACTAATCGATACCCAAGGCTGCCAGCCACAAAAACAC
TGACAATTGTAGCTTCGCTTTGGCGAGAGTTTTCATACTCAATGAATGTGGCAAAATTGC
CAGATGATGCTAGTCAAACTAATGAAAGCAGTGGTCCATCATTAAGACAACAAGTACTTC
GTGGGCCCACAGCATCTGTAAACCTTTTACCACTTGCGGAGGGAAAAAGAAGTCGAAGTA
GCACCCCTAAAGCCACCAACAAGAAAGAAAAGAGAGTGGCACCTTTGAGAATCCGTCTTC
CCAAGAAGAAGAAAAAGGGGGCCTCTAGTGAAGATGAGTTGTCATCTGACAATGATTCTG
ACCTCGAATTTGAGCAAACACTGGCAGCTGCAGCTCAAGCTGCGAGTGACAGCTCATCTA
GTCGACCTTCTTCGAGAAGAAGCAATCCGAGAAACAACAAGGGAAAAAAGAAACCACCTA
TAAAGAAAAAGAAGCTACTAAAAGCAAATCCACAAGATGAAGATGGGTATGAAACTGATC
ACCAAGATTACTGTGACGTTTGTAAACAAGGTGGTGAGATTATACTTTGTGATGGATGCC
CAAGAGCATTTCATCTTGTCTGTCTGGAGCCACCTCTGGATAAACCTCCGGAAGGAAGCT
GGCCATGTCCTGTTTGCGTAAAAAATGGAGTAAAACCTAAAGACAGAAGTGAATATCGCG
ACGATGATTTTATGCTTGATGATGAAGAGGAAGAAGATGAAGAAAACATGGATGATCACA
TGGAGTTCTGTTCTGTGTGCAAAGATGGTGGTGATCTGCTCATATGTGATACCTGCCCAC
ATTCTTACCATCTTAACTGCCTCAACCCTCCTGTTGCTGTTGTGCCTGAAGGAGAGTGGT
CATGTCCCAGATGTTCGTGCCCCATGCTCAAAGGCAAACTGCAGAGGGTGTTGGCATGGA
GATGGAGAGAGGCACCTTACACAGAGGTGCCTGATGAGAGGGCTGGTCAGGAAGGCAAAA
AGAAGAAGCTGTGGGGTTACAAGCAACGGGAGTTCTTAGTGAAATATGCAGAATATTCTT
TTTGGGATGTTGATTGGATCACAGAACTCCAAATGGAAATTTACTGCCCTCATCAGTGGA
GAATGTATTTAAGACGAAATGACATGGAAGAGCCAACTCCATTAGATGAAGATGATGACT
GGACAGACAAAAACCTCATCGAGAAATATTATAGATATGGAGTGCAACCTGAGTGGTTGA
ACATTCATCGCATTCTTAACAGCAGG
| Pfam |
CHD_N (IPR012958) - T[1-34] 6.6E-6 |
| SUPERFAMILY |
Znf_FYVE_PHD (IPR011011) - T[171-230] 7.09E-18 - T[256-321] 1.18E-17 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[173-231] 4.0E-20 - T[253-312] 6.2E-20 |
| ProSiteProfiles |
Znf_PHD-finger (IPR019787) - T[181-228] 10.602 - T[260-307] 10.416 |
| Pfam |
Znf_PHD-finger (IPR019787) - T[183-226] 2.9E-11 - T[262-306] 7.7E-11 |
| SMART |
Znf_PHD (IPR001965) - T[183-226] 4.3E-13 - T[262-305] 3.0E-14 |
| ProSitePatterns |
Zinc_finger_PHD-type_CS (IPR019786) - T[184-225] . - T[263-304] . |
| SMART |
Znf_RING (IPR001841) - T[184-225] 0.36 - T[263-304] 0.023 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[263-305] 8.904 |
| SUPERFAMILY |
Chromo-like_dom_sf (IPR016197) - T[312-388] 4.12E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CHD4_HUMAN | 36.283 % | 285 | 2.08E-85 |
| CHD5_HUMAN | 52.5 % | 281 | 2.31E-84 |
| PF21A_HUMAN | 43.182 % | 83.2 | 5.36E-17 |