Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S12.g00522.01.t

Possible name(s)

ATOH1; TWIST1; TWIST2

Gene model

Phmamm.CG.MTP2014.S12.g00522

Location

S12 [233,526 / 234,585]

Sequences

Amino acid sequence

Length: 277

>Phmamm.CG.MTP2014.S12.g00522.01.p
MNCAYEQGTIDQGITYMRSTAQKRKSDVDSTSSISKKRRPNAAGRERQRLRVFNEALEDL
QSVIPIRLTQNRKLHKKQTLQLAIRYINFLHGCMNGERQWEERNRFWCKSEDELMMDAID
AAGEPSPIDHLPVTTTSHQQLPMENGYNCQPVDDSWNTLPTYNMSPEPPMQYHAQSMTQY
QEGYQQYTAPQFPQTFEEVQHQDLICTKTDEFPVYNSEPFFAEQGPNYFVPINENTCMPD
YSTVAQDDVFHFISSAESVLNPDSPESGFVSTASYDL

Nucleotide sequence

Length: 834

>Phmamm.CG.MTP2014.S12.g00522.01.t
ATGAATTGCGCATACGAACAAGGCACCATCGATCAGGGTATAACCTATATGCGATCAACC
GCCCAGAAGCGAAAGAGTGACGTCGATTCTACGTCAAGCATAAGCAAAAAGAGACGCCCA
AACGCCGCCGGTAGAGAGCGCCAAAGGTTGCGGGTGTTCAACGAGGCTTTGGAAGATTTG
CAAAGTGTAATTCCGATCAGGCTTACACAGAATAGAAAACTCCACAAAAAGCAAACCCTT
CAGCTGGCAATTCGCTACATCAACTTTTTGCACGGTTGCATGAATGGCGAGAGGCAGTGG
GAAGAAAGAAATCGTTTCTGGTGCAAATCAGAAGACGAATTGATGATGGACGCCATTGAC
GCCGCTGGTGAACCCTCACCAATCGATCACTTGCCAGTGACCACCACAAGTCATCAGCAA
TTGCCAATGGAGAACGGATATAATTGTCAGCCTGTTGACGACAGTTGGAACACACTTCCC
ACCTATAACATGTCACCGGAACCACCAATGCAATACCATGCCCAATCGATGACGCAGTAC
CAAGAGGGTTATCAGCAGTACACGGCACCACAATTTCCCCAGACTTTCGAAGAAGTGCAG
CACCAGGACTTAATCTGCACAAAAACCGATGAATTTCCGGTTTACAACTCAGAACCGTTT
TTCGCTGAACAAGGTCCCAATTACTTTGTACCTATCAACGAAAACACATGTATGCCAGAT
TACTCCACTGTCGCACAAGATGATGTGTTTCATTTTATTTCGTCTGCGGAAAGCGTTTTA
AACCCAGACAGCCCAGAAAGTGGATTTGTTTCAACGGCATCCTACGATTTGTGA

InterProScan

PANTHER	Twist-related (IPR015789) - T[20-196] 1.4E-40
Gene3D	HLH_DNA-bd_sf (IPR036638) - T[30-95] 1.3E-14
SUPERFAMILY	HLH_DNA-bd_sf (IPR036638) - T[30-103] 1.1E-12
CDD	bHLH_dom (IPR011598) - T[33-91] 2.44615E-10
ProSiteProfiles	bHLH_dom (IPR011598) - T[37-90] 13.249
Pfam	bHLH_dom (IPR011598) - T[39-90] 3.0E-10
SMART	bHLH_dom (IPR011598) - T[43-96] 5.5E-6

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value