- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S1321.g14477.01.t
Possible name(s)
ASCC3; HFM1; SNRNP200
Gene model
Location
S1321 [21,474 / 28,144]
Amino acid sequence
Length: 2,143
>Phmamm.CG.MTP2014.S1321.g14477.01.p
MADASARSLQYEYKANSNLVLQADRSLIDRRPRDEPTGEVLSLQGKLGTIQMGDRAQRTK
PPQMEERKAKRRKRDEDEKGQGNLRGRTLLSDGVDEMVGIVYKPKTKETRETYEILLSFI
QAAIGDQPRDILCGAADEVISVLKNEKHRDKERRKEVQSLLGTLEDTRYHVLVNLGRKIT
DFGIDKDALTADDNIDETYGVNVQFDSDEEGGEEDTYGEVREGSDAEEEEEEGVEADAGM
VVSGNLTNQAGDINITKQKDLHPRDIDAYWLQRNLSKVYDDAIVSQRKAEEVLEILKTTT
DDLQCENQLVLLLGYNQFDFIKVVRQHREMILYCTLLASSQSEAGRSQIEDKMKSDPVLA
NILKQLHDTEKEDIIKEEQERRERLRRSKVDADLEATDADHAKTDDAFQPSHKTVDLEDL
EFGQGSHFMANKKCQLPDGSYRKQWKGYEEVHVPALKHKPFDDKEKLVPIDTMPKFAQAA
FSGYKTLNRVQSKLSKTCLESDENVLLCAPTGAGKTNVALLCMLKEIGKHINNDGTIKLD
SFKIIYIAPMKSLVQEMVGNFGKRLSSYGIKVSELTGDHQLCKEEINATQVIICTPEKWD
IITRKGGERTYTQLVRLIIMDEIHMLHDGRGPVLEAIVARTIRSIETTQEDVRLVGLSAT
LPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQQYIGITEKKPLKRFQVMNEIVYEKVVD
NAGKNQVLIFVHSRKETGKTARAIRDMCLENDTLGNFLREGSASTEVLRTEAEQVKNFEL
KDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTSTLAWGVNLPAHTVIIKGTQVY
SPEKGRWVELGALDVLQMMGRAGRPQYDTKGEGVLITAHSELQYYLSLLNQQLPVESQMI
SKLPDAINAEIVLGNIQSVKDAVTWLGYTYLYIRALRNPSLYGVESLADDPLLQQRRIDL
AHAAVSLLAKNNLAKYDRKTGQIQVTDLGRIASHYYCSNESMATYNQLLKPTLSEIELFR
VFSLSSEFKYITVREEEKLELNKLLEKVPIPVKESIEESSAKVNVLLQAYISQLKLEGFA
LMADMVYVTQSAGRLMRAIYEIVLFRGWAQLADKCLSLCKMIQCRMWQSMTPLRQFKKVP
EEVVKKIEKKNFPWERFYDLGHNEIGELIRMPKMGKTLHKLVHQFPKMELSVHVQPITRS
TLRVELTITPDFQWDEKVHGHSQAFYIFVEDVDSEVILHHEYFLLKRKYATDEHVVNFFV
PVFEPLPPQYFIRIISDKWIASETQLPVSFRHLVLPEKYPPPTELLDLQPLPVTALRNPE
FEALYENNFPCFNPIQTQVFNAIYNGDENVFVGAPTGSGKTICAEFALFRAFSNDPEARC
VYVTPVEAVAELTYKDWREKFEVRLGKRVALLTGETSTDLRLISRASIIIATSERWDVIS
RRWKQRRNVHSVSLFIVDEIHLIGGESGPELEVVCSRMRYIASQLEKQIRIVALGSSLAN
ARDVAQWLGCSAMHTFNFHPNVRPVPLELHIQGFNITHTQSRLLSMAKPVFNAITKHSPK
RAVIIFVPSRKQSKLTAVDVLTYAAADGSPQRFLHCNESELGAYLEHVKDATLKETLCNG
VAYLHDGTTQIERTVVEQLFSSGAVQVLVASRSLCWGLNLAAHLVIVMDTQHYNGKIHAY
VDYPVTDVLQMIGRANRPLKDEEGKCVVMCQTSKKDFFKKFVYEPLPVESHLDHCLHDHF
NAEIVTKIIENKQDAVDYLTWTFLYRRMSQNPNYYNLQGVSHRHLSDSLSELVENTLADL
EQSKCISIEDEMDITPLNLAMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYE
SIQIRRHEDNTLKQLLPKVQYKPQNIRFTDPHIKTNLLLQAHLSRLQLPAELQSDTEQIL
GKAVRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSRDSYLKQLPHFGSDLIKKCSD
KEIESVFDILEMEDADREELLQMSEAQMADVARFCNRYPNIELSYDVQNPDNLHAGSPVV
VLVALEREDEVAGPVIAPFFPQKREEGWWVVVGDPKTNSLISIKRLTLQQKAKVKLDFIP
PSAGSHSYTLYFMSDAYMGCDQEYKLTINVRESEGESSGSESD
Nucleotide sequence
Length: 6,432
>Phmamm.CG.MTP2014.S1321.g14477.01.t
ATGGCAGATGCATCTGCCCGTTCCCTGCAGTATGAATACAAGGCAAATTCCAATCTTGTT
TTGCAAGCTGACAGGTCTTTGATTGACAGAAGACCTAGAGATGAGCCGACAGGTGAAGTC
TTGTCCCTTCAGGGCAAACTTGGCACTATTCAGATGGGTGATCGGGCCCAGCGGACAAAA
CCACCCCAGATGGAGGAAAGAAAGGCCAAGCGTAGAAAGAGAGATGAAGATGAAAAAGGC
CAAGGAAATCTGAGAGGACGCACCTTGTTATCTGATGGTGTTGATGAAATGGTCGGTATT
GTCTATAAGCCAAAGACAAAAGAGACCAGAGAGACTTATGAAATTTTGCTAAGCTTTATT
CAAGCGGCAATTGGTGACCAGCCAAGAGACATATTGTGTGGGGCTGCTGATGAGGTGATT
TCTGTTCTCAAAAATGAGAAACATCGTGATAAAGAACGCCGCAAAGAAGTCCAGTCATTG
CTTGGGACCTTGGAAGACACAAGGTACCATGTCCTGGTGAATCTTGGGCGGAAAATTACT
GACTTTGGAATCGACAAGGATGCTCTGACGGCAGATGACAATATTGATGAAACTTATGGA
GTCAATGTACAATTTGATTCTGATGAAGAAGGTGGAGAGGAAGACACATATGGTGAAGTG
CGAGAAGGATCAGATGCAGAGGAAGAAGAGGAGGAGGGAGTTGAAGCTGATGCTGGAATG
GTTGTATCAGGAAACCTGACTAACCAAGCTGGTGATATCAACATTACAAAACAAAAGGAT
CTTCACCCCAGGGATATTGATGCTTACTGGCTGCAGAGAAATCTGAGTAAAGTTTATGAT
GATGCTATTGTTTCACAAAGAAAGGCCGAAGAAGTGCTTGAAATTTTGAAAACAACCACA
GATGATTTGCAGTGTGAGAATCAACTTGTTTTACTGCTTGGCTACAATCAGTTTGACTTC
ATTAAGGTGGTTCGCCAGCATAGGGAGATGATTTTGTACTGCACACTTTTGGCAAGTTCA
CAAAGTGAAGCTGGTCGGAGTCAAATTGAAGATAAGATGAAGTCTGATCCAGTGCTTGCA
AACATTCTAAAGCAACTGCATGACACTGAAAAGGAAGACATTATAAAGGAAGAGCAAGAG
CGAAGAGAGCGCCTTCGCAGAAGTAAAGTTGATGCTGATTTGGAGGCCACTGATGCTGAC
CATGCAAAGACTGATGATGCCTTTCAGCCAAGCCATAAGACTGTTGATTTGGAAGACTTG
GAATTTGGACAAGGTTCTCATTTTATGGCCAACAAAAAGTGCCAACTGCCAGATGGGTCA
TACCGCAAACAATGGAAGGGTTATGAGGAGGTGCACGTACCTGCTTTAAAGCACAAACCA
TTTGATGACAAGGAAAAGTTGGTTCCTATTGATACAATGCCTAAATTTGCACAAGCTGCC
TTTTCTGGATATAAAACTCTTAATCGTGTGCAGAGTAAATTGTCAAAAACCTGTTTGGAA
AGTGATGAAAATGTGTTACTGTGTGCCCCAACAGGTGCTGGAAAGACCAATGTTGCTTTG
TTGTGTATGTTAAAGGAGATAGGCAAGCACATTAACAATGATGGAACTATTAAACTGGAC
AGTTTTAAAATTATCTACATTGCCCCAATGAAATCACTTGTCCAAGAAATGGTTGGAAAC
TTTGGAAAGCGTTTGTCCAGCTATGGTATCAAAGTGTCTGAATTAACTGGAGACCATCAG
TTATGTAAGGAAGAAATTAATGCCACCCAAGTTATTATTTGCACTCCAGAGAAATGGGAT
ATCATTACAAGAAAAGGAGGTGAAAGAACATACACACAGCTGGTGCGTCTGATTATCATG
GATGAGATTCATATGTTGCATGATGGAAGAGGTCCTGTTTTGGAGGCTATTGTTGCTAGG
ACCATTCGTTCTATTGAAACAACTCAAGAGGATGTTCGTCTGGTTGGGTTGTCTGCTACT
TTACCAAACTATGAAGATGTTGCTACATTTTTGCGAGTTGATCCTGCTAAAGGTCTGTTT
TATTTTGACAACAGTTTCAGACCTGTACCTCTGGAGCAGCAGTACATTGGCATCACAGAA
AAAAAGCCACTGAAAAGATTTCAAGTTATGAATGAAATTGTGTATGAAAAGGTTGTGGAC
AATGCTGGCAAAAATCAAGTCCTTATCTTTGTACATTCCCGAAAAGAGACTGGTAAAACA
GCTAGGGCCATCAGGGATATGTGTCTGGAGAATGACACATTGGGAAACTTCCTTCGTGAG
GGCTCTGCTTCGACAGAAGTTTTGCGCACAGAAGCTGAGCAGGTCAAGAACTTTGAGTTG
AAAGATCTTCTTCCGTATGGTTTTGCTATCCATCATGCTGGAATGACTCGTGTCGATCGT
ACACTTGTGGAGGATTTGTTTGCTGACAAGCATATTCAAGTGTTGGTATCTACATCTACT
TTAGCGTGGGGTGTAAATTTACCAGCTCACACTGTCATCATTAAAGGCACACAAGTGTAC
AGTCCTGAGAAAGGAAGATGGGTCGAACTGGGTGCATTGGATGTTTTGCAGATGATGGGC
CGAGCTGGCAGACCACAATATGACACAAAGGGTGAAGGTGTTCTGATTACTGCCCACAGT
GAATTGCAGTATTATCTTTCTCTTCTTAATCAGCAACTGCCAGTGGAAAGTCAAATGATA
TCCAAGCTTCCAGATGCTATCAATGCCGAAATAGTTCTTGGCAATATTCAAAGTGTGAAG
GATGCTGTCACTTGGTTGGGTTACACCTATCTTTACATCCGTGCATTACGAAACCCTTCA
TTGTACGGAGTTGAGTCTCTTGCAGATGATCCACTTCTCCAACAGAGAAGAATTGATTTA
GCCCATGCTGCAGTCAGTTTGCTGGCAAAGAACAACCTTGCCAAGTATGACAGAAAAACA
GGTCAAATTCAAGTCACTGATCTCGGTAGGATTGCCAGCCATTATTACTGCTCAAATGAA
AGCATGGCAACCTACAACCAACTACTGAAACCAACACTGAGTGAAATTGAGCTCTTTAGA
GTCTTTTCACTTTCTTCGGAATTCAAGTACATCACTGTCAGAGAGGAAGAAAAACTGGAG
CTAAATAAACTGCTGGAAAAGGTACCAATTCCTGTCAAAGAGAGCATTGAGGAATCCTCA
GCCAAGGTGAATGTGTTGCTGCAGGCTTACATCTCACAGTTGAAGTTAGAGGGCTTTGCA
TTGATGGCAGACATGGTGTATGTGACACAGAGTGCTGGCCGTCTTATGAGAGCTATATAT
GAGATCGTGCTTTTCAGAGGCTGGGCACAGCTTGCAGACAAGTGCTTGTCATTGTGTAAA
ATGATCCAATGTCGAATGTGGCAGTCCATGACACCTCTGCGCCAGTTTAAAAAAGTGCCT
GAAGAGGTGGTGAAGAAGATTGAAAAGAAAAACTTTCCTTGGGAGAGGTTTTATGATCTT
GGACACAATGAAATTGGTGAGTTAATCAGGATGCCAAAAATGGGAAAAACTCTTCACAAG
CTGGTCCATCAGTTTCCCAAGATGGAGCTTTCAGTGCATGTGCAGCCAATCACAAGATCC
ACCTTGAGGGTTGAACTGACCATTACACCTGATTTTCAGTGGGATGAGAAAGTTCATGGC
CACTCCCAGGCATTTTACATCTTTGTTGAAGATGTTGACAGTGAAGTAATTCTTCACCAT
GAGTATTTTCTTCTAAAGCGCAAGTATGCTACTGATGAGCATGTGGTGAACTTCTTTGTT
CCAGTATTTGAGCCACTTCCACCTCAGTACTTTATTCGAATCATCTCAGACAAATGGATT
GCTTCAGAGACACAACTGCCTGTGTCCTTCCGCCACTTGGTTCTGCCAGAGAAGTACCCA
CCACCGACGGAGTTGCTTGATTTGCAACCACTGCCAGTTACTGCTTTGCGAAATCCTGAA
TTTGAAGCTCTATATGAAAACAACTTCCCATGCTTCAATCCTATTCAAACCCAAGTTTTT
AATGCAATTTATAATGGTGATGAAAATGTTTTTGTCGGTGCTCCCACCGGCAGTGGTAAA
ACCATTTGTGCTGAGTTTGCTCTTTTCCGGGCTTTTAGCAATGATCCAGAAGCACGTTGT
GTTTATGTCACACCTGTTGAAGCAGTCGCTGAACTGACATACAAAGATTGGAGAGAAAAA
TTTGAGGTTCGCCTGGGCAAGCGTGTTGCACTTCTTACAGGTGAGACGAGCACTGATCTT
CGTCTTATATCAAGAGCATCAATTATCATCGCCACTTCTGAAAGGTGGGATGTTATTTCA
CGCAGATGGAAACAGCGGAGGAATGTACATAGTGTGTCACTCTTCATTGTAGATGAAATC
CATTTGATTGGAGGGGAAAGTGGTCCTGAATTGGAAGTTGTTTGCTCCCGTATGCGTTAC
ATTGCATCTCAACTTGAAAAGCAGATACGTATTGTTGCTCTGGGTTCCTCCTTGGCGAAT
GCAAGAGATGTAGCTCAATGGCTTGGCTGCTCAGCAATGCACACCTTCAACTTTCACCCA
AATGTTCGACCAGTACCACTTGAGCTGCACATCCAGGGTTTCAACATCACTCACACTCAA
TCCAGATTGTTGAGCATGGCAAAACCTGTATTCAATGCCATCACCAAGCATTCACCCAAG
CGTGCTGTCATTATCTTTGTGCCGTCAAGAAAACAAAGCAAGTTGACAGCAGTTGATGTT
CTCACATATGCAGCAGCCGATGGAAGCCCACAAAGATTCCTTCACTGCAATGAGTCTGAA
CTTGGAGCCTATCTGGAGCATGTTAAGGATGCTACACTTAAAGAAACTCTCTGCAACGGT
GTTGCCTACCTTCATGATGGAACAACTCAGATTGAAAGAACAGTGGTGGAGCAACTTTTC
TCATCTGGAGCTGTACAAGTTCTTGTTGCTTCCCGCAGCCTCTGCTGGGGTCTTAATCTT
GCTGCTCATCTTGTTATTGTGATGGACACCCAGCATTACAATGGAAAAATACATGCTTAT
GTGGACTACCCAGTCACAGATGTGCTGCAGATGATAGGAAGAGCTAATCGGCCACTGAAA
GATGAAGAGGGAAAATGTGTTGTAATGTGCCAAACATCAAAGAAAGATTTTTTCAAAAAG
TTTGTCTACGAGCCATTGCCAGTGGAGTCTCACTTGGACCACTGTCTTCATGACCATTTC
AATGCTGAAATTGTGACAAAGATCATTGAAAATAAACAGGATGCAGTTGACTATCTTACC
TGGACCTTCTTGTACAGGCGCATGAGCCAGAATCCGAACTACTACAACTTGCAAGGTGTG
TCTCATCGCCATTTGTCTGACAGTCTGTCTGAACTTGTAGAAAACACTCTTGCTGACCTG
GAGCAATCTAAATGTATATCGATTGAGGATGAAATGGACATCACCCCATTGAACTTAGCT
ATGATTGCTGCTTACTACTACATCAACTACACAACAATCGAGCTCTTCAGCATGTCCCTG
AATGCCAAAACCAAAATAAGAGGTCTTATTGAAATCATCAGCAATGCAGCAGAGTATGAA
AGTATCCAGATCAGACGACATGAAGACAACACGCTGAAGCAGCTTTTACCCAAAGTTCAA
TACAAGCCCCAGAACATCAGATTTACTGACCCTCATATTAAGACCAACCTTTTGCTGCAA
GCTCATCTATCCCGACTGCAGCTTCCAGCTGAACTACAATCAGATACAGAGCAGATCTTG
GGCAAAGCAGTTCGTCTTATTCAAGCTTGTGTGGATGTACTTTCTTCCAATGGATGGCTT
TCACCAGCCTTGGCAGCTATGGAGCTTGCACAAATGGTCACACAAGCTATGTGGAGCAGA
GATTCTTATCTCAAACAACTTCCACACTTTGGTTCTGACTTGATCAAGAAATGTTCGGAT
AAGGAAATTGAGAGTGTCTTTGACATTCTTGAAATGGAAGATGCAGATCGTGAGGAGCTT
CTACAGATGAGTGAGGCACAAATGGCAGATGTTGCTCGCTTTTGCAACAGATATCCAAAC
ATCGAACTGTCTTATGATGTGCAAAACCCTGACAACCTGCATGCAGGCAGTCCAGTAGTG
GTGCTGGTTGCCCTGGAACGTGAAGATGAGGTGGCTGGTCCTGTGATTGCCCCATTTTTC
CCACAGAAACGCGAGGAGGGCTGGTGGGTAGTTGTTGGTGACCCTAAGACAAACAGCCTA
ATCTCAATCAAGAGGTTGACCCTTCAGCAAAAGGCCAAGGTAAAACTGGACTTTATACCA
CCATCAGCTGGCTCCCACTCGTACACTCTCTACTTCATGAGTGATGCCTACATGGGCTGT
GACCAAGAATACAAACTTACTATTAATGTCAGGGAATCTGAAGGGGAGAGCAGTGGCAGC
GAATCGGATTAA
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[426-672] 2.18E-44 - T[682-894] 2.96E-48 - T[1220-1509] 3.84E-48 - T[1518-1727] 3.28E-42 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[483-694] 1.2E-31 - T[1328-1532] 1.8E-21 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[489-664] 2.2E-25 - T[1334-1494] 7.2E-23 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[496-679] 21.808 - T[1341-1516] 18.085 |
| SMART |
AAA+_ATPase (IPR003593) - T[501-818] 0.18 - T[1346-1521] 2.9 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[690-927] 11.898 - T[1546-1756] 9.981 |
| CDD |
Helicase_C (IPR001650) - T[690-864] 2.59086E-15 - T[1613-1709] 6.65602E-9 |
| Pfam |
Helicase_C (IPR001650) - T[773-864] 4.6E-7 - T[1556-1697] 1.5E-6 |
| SMART |
Helicase_C (IPR001650) - T[774-866] 1.6E-17 - T[1611-1699] 1.9E-13 |
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[894-996] 1.12E-5 - T[1727-1827] 1.41E-7 |
| SMART |
Sec63-dom (IPR004179) - T[985-1290] 2.0E-127 - T[1816-2128] 1.7E-108 |
| Pfam |
Sec63-dom (IPR004179) - T[986-1289] 7.0E-91 - T[1816-2126] 1.1E-77 |
| Gene3D |
C2_domain_sf (IPR035892) - T[1185-1293] 4.0E-48 - T[2019-2140] 1.1E-46 |
| SUPERFAMILY |
Ig_E-set (IPR014756) - T[2020-2132] 6.58E-32 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ASCC3_HUMAN | 42.976 % | 1506 | 0 |
| U520_HUMAN | 77.934 % | 3503 | 0 |
| HFM1_HUMAN | 31.74 % | 326 | 1.17E-90 |