- Clone 'cicl031g22' >
- Transcript 'KH2012:KH.C11.39.v2....' >
- Clone 'CCTU14463' >
- Clone 'mae28h17' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S1321.g14477.02.t
Possible name(s)
ASCC3; HFM1; SNRNP200
Gene model
Location
S1321 [21,496 / 28,262]
Amino acid sequence
Length: 2,135
>Phmamm.CG.MTP2014.S1321.g14477.02.p
LQYEYKANSNLVLQADRSLIDRRPRDEPTGEVLSLQGKLGTIQMGDRAQRTKPPQMEERK
AKRRKRDEDEKGQGNLRGRTLLSDGVDEMVGIVYKPKTKETRETYEILLSFIQAAIGDQP
RDILCGAADEVISVLKNEKHRDKERRKEVQSLLGTLEDTRYHVLVNLGRKITDFGIDKDA
LTADDNIDETYGVNVQFDSDEEGGEEDTYGEVREGSDAEEEEEEGVEADAGMVVSGNLTN
QAGDINITKQKDLHPRDIDAYWLQRNLSKVYDDAIVSQRKAEEVLEILKTTTDDLQCENQ
LVLLLGYNQFDFIKVVRQHREMILYCTLLASSQSEAGRSQIEDKMKSDPVLANILKQLHD
TEKEDIIKEEQERRERLRRSKVDADLEATDADHAKTDDAFQPSHKTVDLEDLEFGQGSHF
MANKKCQLPDGSYRKQWKGYEEVHVPALKHKPFDDKEKLVPIDTMPKFAQAAFSGYKTLN
RVQSKLSKTCLESDENVLLCAPTGAGKTNVALLCMLKEIGKHINNDGTIKLDSFKIIYIA
PMKSLVQEMVGNFGKRLSSYGIKVSELTGDHQLCKEEINATQVIICTPEKWDIITRKGGE
RTYTQLVRLIIMDEIHMLHDGRGPVLEAIVARTIRSIETTQEDVRLVGLSATLPNYEDVA
TFLRVDPAKGLFYFDNSFRPVPLEQQYIGITEKKPLKRFQVMNEIVYEKVVDNAGKNQVL
IFVHSRKETGKTARAIRDMCLENDTLGNFLREGSASTEVLRTEAEQVKNFELKDLLPYGF
AIHHAGMTRVDRTLVEDLFADKHIQVLVSTSTLAWGVNLPAHTVIIKGTQVYSPEKGRWV
ELGALDVLQMMGRAGRPQYDTKGEGVLITAHSELQYYLSLLNQQLPVESQMISKLPDAIN
AEIVLGNIQSVKDAVTWLGYTYLYIRALRNPSLYGVESLADDPLLQQRRIDLAHAAVSLL
AKNNLAKYDRKTGQIQVTDLGRIASHYYCSNESMATYNQLLKPTLSEIELFRVFSLSSEF
KYITVREEEKLELNKLLEKVPIPVKESIEESSAKVNVLLQAYISQLKLEGFALMADMVYV
TQSAGRLMRAIYEIVLFRGWAQLADKCLSLCKMIQCRMWQSMTPLRQFKKVPEEVVKKIE
KKNFPWERFYDLGHNEIGELIRMPKMGKTLHKLVHQFPKMELSVHVQPITRSTLRVELTI
TPDFQWDEKVHGHSQAFYIFVEDVDSEVILHHEYFLLKRKYATDEHVVNFFVPVFEPLPP
QYFIRIISDKWIASETQLPVSFRHLVLPEKYPPPTELLDLQPLPVTALRNPEFEALYENN
FPCFNPIQTQVFNAIYNGDENVFVGAPTGSGKTICAEFALFRAFSNDPEARCVYVTPVEA
VAELTYKDWREKFEVRLGKRVALLTGETSTDLRLISRASIIIATSERWDVISRRWKQRRN
VHSVSLFIVDEIHLIGGESGPELEVVCSRMRYIASQLEKQIRIVALGSSLANARDVAQWL
GCSAMHTFNFHPNVRPVPLELHIQGFNITHTQSRLLSMAKPVFNAITKHSPKRAVIIFVP
SRKQSKLTAVDVLTYAAADGSPQRFLHCNESELGAYLEHVKDATLKETLCNGVAYLHDGT
TQIERTVVEQLFSSGAVQVLVASRSLCWGLNLAAHLVIVMDTQHYNGKIHAYVDYPVTDV
LQMIGRANRPLKDEEGKCVVMCQTSKKDFFKKFVYEPLPVESHLDHCLHDHFNAEIVTKI
IENKQDAVDYLTWTFLYRRMSQNPNYYNLQGVSHRHLSDSLSELVENTLADLEQSKCISI
EDEMDITPLNLAMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYESIQIRRHE
DNTLKQLLPKVQYKPQNIRFTDPHIKTNLLLQAHLSRLQLPAELQSDTEQILGKAVRLIQ
ACVDVLSSNGWLSPALAAMELAQMVTQAMWSRDSYLKQLPHFGSDLIKKCSDKEIESVFD
ILEMEDADREELLQMSEAQMADVARFCNRYPNIELSYDVQNPDNLHAGSPVVVLVALERE
DEVAGPVIAPFFPQKREEGWWVVVGDPKTNSLISIKRLTLQQKAKVKLDFIPPSAGSHSY
TLYFMSDAYMGCDQEYKLTINVRESEGESSGSESD
Nucleotide sequence
Length: 6,528
>Phmamm.CG.MTP2014.S1321.g14477.02.t
CCCTGCAGTATGAATACAAGGCAAATTCCAATCTTGTTTTGCAAGCTGACAGGTCTTTGA
TTGACAGAAGACCTAGAGATGAGCCGACAGGTGAAGTCTTGTCCCTTCAGGGCAAACTTG
GCACTATTCAGATGGGTGATCGGGCCCAGCGGACAAAACCACCCCAGATGGAGGAAAGAA
AGGCCAAGCGTAGAAAGAGAGATGAAGATGAAAAAGGCCAAGGAAATCTGAGAGGACGCA
CCTTGTTATCTGATGGTGTTGATGAAATGGTCGGTATTGTCTATAAGCCAAAGACAAAAG
AGACCAGAGAGACTTATGAAATTTTGCTAAGCTTTATTCAAGCGGCAATTGGTGACCAGC
CAAGAGACATATTGTGTGGGGCTGCTGATGAGGTGATTTCTGTTCTCAAAAATGAGAAAC
ATCGTGATAAAGAACGCCGCAAAGAAGTCCAGTCATTGCTTGGGACCTTGGAAGACACAA
GGTACCATGTCCTGGTGAATCTTGGGCGGAAAATTACTGACTTTGGAATCGACAAGGATG
CTCTGACGGCAGATGACAATATTGATGAAACTTATGGAGTCAATGTACAATTTGATTCTG
ATGAAGAAGGTGGAGAGGAAGACACATATGGTGAAGTGCGAGAAGGATCAGATGCAGAGG
AAGAAGAGGAGGAGGGAGTTGAAGCTGATGCTGGAATGGTTGTATCAGGAAACCTGACTA
ACCAAGCTGGTGATATCAACATTACAAAACAAAAGGATCTTCACCCCAGGGATATTGATG
CTTACTGGCTGCAGAGAAATCTGAGTAAAGTTTATGATGATGCTATTGTTTCACAAAGAA
AGGCCGAAGAAGTGCTTGAAATTTTGAAAACAACCACAGATGATTTGCAGTGTGAGAATC
AACTTGTTTTACTGCTTGGCTACAATCAGTTTGACTTCATTAAGGTGGTTCGCCAGCATA
GGGAGATGATTTTGTACTGCACACTTTTGGCAAGTTCACAAAGTGAAGCTGGTCGGAGTC
AAATTGAAGATAAGATGAAGTCTGATCCAGTGCTTGCAAACATTCTAAAGCAACTGCATG
ACACTGAAAAGGAAGACATTATAAAGGAAGAGCAAGAGCGAAGAGAGCGCCTTCGCAGAA
GTAAAGTTGATGCTGATTTGGAGGCCACTGATGCTGACCATGCAAAGACTGATGATGCCT
TTCAGCCAAGCCATAAGACTGTTGATTTGGAAGACTTGGAATTTGGACAAGGTTCTCATT
TTATGGCCAACAAAAAGTGCCAACTGCCAGATGGGTCATACCGCAAACAATGGAAGGGTT
ATGAGGAGGTGCACGTACCTGCTTTAAAGCACAAACCATTTGATGACAAGGAAAAGTTGG
TTCCTATTGATACAATGCCTAAATTTGCACAAGCTGCCTTTTCTGGATATAAAACTCTTA
ATCGTGTGCAGAGTAAATTGTCAAAAACCTGTTTGGAAAGTGATGAAAATGTGTTACTGT
GTGCCCCAACAGGTGCTGGAAAGACCAATGTTGCTTTGTTGTGTATGTTAAAGGAGATAG
GCAAGCACATTAACAATGATGGAACTATTAAACTGGACAGTTTTAAAATTATCTACATTG
CCCCAATGAAATCACTTGTCCAAGAAATGGTTGGAAACTTTGGAAAGCGTTTGTCCAGCT
ATGGTATCAAAGTGTCTGAATTAACTGGAGACCATCAGTTATGTAAGGAAGAAATTAATG
CCACCCAAGTTATTATTTGCACTCCAGAGAAATGGGATATCATTACAAGAAAAGGAGGTG
AAAGAACATACACACAGCTGGTGCGTCTGATTATCATGGATGAGATTCATATGTTGCATG
ATGGAAGAGGTCCTGTTTTGGAGGCTATTGTTGCTAGGACCATTCGTTCTATTGAAACAA
CTCAAGAGGATGTTCGTCTGGTTGGGTTGTCTGCTACTTTACCAAACTATGAAGATGTTG
CTACATTTTTGCGAGTTGATCCTGCTAAAGGTCTGTTTTATTTTGACAACAGTTTCAGAC
CTGTACCTCTGGAGCAGCAGTACATTGGCATCACAGAAAAAAAGCCACTGAAAAGATTTC
AAGTTATGAATGAAATTGTGTATGAAAAGGTTGTGGACAATGCTGGCAAAAATCAAGTCC
TTATCTTTGTACATTCCCGAAAAGAGACTGGTAAAACAGCTAGGGCCATCAGGGATATGT
GTCTGGAGAATGACACATTGGGAAACTTCCTTCGTGAGGGCTCTGCTTCGACAGAAGTTT
TGCGCACAGAAGCTGAGCAGGTCAAGAACTTTGAGTTGAAAGATCTTCTTCCGTATGGTT
TTGCTATCCATCATGCTGGAATGACTCGTGTCGATCGTACACTTGTGGAGGATTTGTTTG
CTGACAAGCATATTCAAGTGTTGGTATCTACATCTACTTTAGCGTGGGGTGTAAATTTAC
CAGCTCACACTGTCATCATTAAAGGCACACAAGTGTACAGTCCTGAGAAAGGAAGATGGG
TCGAACTGGGTGCATTGGATGTTTTGCAGATGATGGGCCGAGCTGGCAGACCACAATATG
ACACAAAGGGTGAAGGTGTTCTGATTACTGCCCACAGTGAATTGCAGTATTATCTTTCTC
TTCTTAATCAGCAACTGCCAGTGGAAAGTCAAATGATATCCAAGCTTCCAGATGCTATCA
ATGCCGAAATAGTTCTTGGCAATATTCAAAGTGTGAAGGATGCTGTCACTTGGTTGGGTT
ACACCTATCTTTACATCCGTGCATTACGAAACCCTTCATTGTACGGAGTTGAGTCTCTTG
CAGATGATCCACTTCTCCAACAGAGAAGAATTGATTTAGCCCATGCTGCAGTCAGTTTGC
TGGCAAAGAACAACCTTGCCAAGTATGACAGAAAAACAGGTCAAATTCAAGTCACTGATC
TCGGTAGGATTGCCAGCCATTATTACTGCTCAAATGAAAGCATGGCAACCTACAACCAAC
TACTGAAACCAACACTGAGTGAAATTGAGCTCTTTAGAGTCTTTTCACTTTCTTCGGAAT
TCAAGTACATCACTGTCAGAGAGGAAGAAAAACTGGAGCTAAATAAACTGCTGGAAAAGG
TACCAATTCCTGTCAAAGAGAGCATTGAGGAATCCTCAGCCAAGGTGAATGTGTTGCTGC
AGGCTTACATCTCACAGTTGAAGTTAGAGGGCTTTGCATTGATGGCAGACATGGTGTATG
TGACACAGAGTGCTGGCCGTCTTATGAGAGCTATATATGAGATCGTGCTTTTCAGAGGCT
GGGCACAGCTTGCAGACAAGTGCTTGTCATTGTGTAAAATGATCCAATGTCGAATGTGGC
AGTCCATGACACCTCTGCGCCAGTTTAAAAAAGTGCCTGAAGAGGTGGTGAAGAAGATTG
AAAAGAAAAACTTTCCTTGGGAGAGGTTTTATGATCTTGGACACAATGAAATTGGTGAGT
TAATCAGGATGCCAAAAATGGGAAAAACTCTTCACAAGCTGGTCCATCAGTTTCCCAAGA
TGGAGCTTTCAGTGCATGTGCAGCCAATCACAAGATCCACCTTGAGGGTTGAACTGACCA
TTACACCTGATTTTCAGTGGGATGAGAAAGTTCATGGCCACTCCCAGGCATTTTACATCT
TTGTTGAAGATGTTGACAGTGAAGTAATTCTTCACCATGAGTATTTTCTTCTAAAGCGCA
AGTATGCTACTGATGAGCATGTGGTGAACTTCTTTGTTCCAGTATTTGAGCCACTTCCAC
CTCAGTACTTTATTCGAATCATCTCAGACAAATGGATTGCTTCAGAGACACAACTGCCTG
TGTCCTTCCGCCACTTGGTTCTGCCAGAGAAGTACCCACCACCGACGGAGTTGCTTGATT
TGCAACCACTGCCAGTTACTGCTTTGCGAAATCCTGAATTTGAAGCTCTATATGAAAACA
ACTTCCCATGCTTCAATCCTATTCAAACCCAAGTTTTTAATGCAATTTATAATGGTGATG
AAAATGTTTTTGTCGGTGCTCCCACCGGCAGTGGTAAAACCATTTGTGCTGAGTTTGCTC
TTTTCCGGGCTTTTAGCAATGATCCAGAAGCACGTTGTGTTTATGTCACACCTGTTGAAG
CAGTCGCTGAACTGACATACAAAGATTGGAGAGAAAAATTTGAGGTTCGCCTGGGCAAGC
GTGTTGCACTTCTTACAGGTGAGACGAGCACTGATCTTCGTCTTATATCAAGAGCATCAA
TTATCATCGCCACTTCTGAAAGGTGGGATGTTATTTCACGCAGATGGAAACAGCGGAGGA
ATGTACATAGTGTGTCACTCTTCATTGTAGATGAAATCCATTTGATTGGAGGGGAAAGTG
GTCCTGAATTGGAAGTTGTTTGCTCCCGTATGCGTTACATTGCATCTCAACTTGAAAAGC
AGATACGTATTGTTGCTCTGGGTTCCTCCTTGGCGAATGCAAGAGATGTAGCTCAATGGC
TTGGCTGCTCAGCAATGCACACCTTCAACTTTCACCCAAATGTTCGACCAGTACCACTTG
AGCTGCACATCCAGGGTTTCAACATCACTCACACTCAATCCAGATTGTTGAGCATGGCAA
AACCTGTATTCAATGCCATCACCAAGCATTCACCCAAGCGTGCTGTCATTATCTTTGTGC
CGTCAAGAAAACAAAGCAAGTTGACAGCAGTTGATGTTCTCACATATGCAGCAGCCGATG
GAAGCCCACAAAGATTCCTTCACTGCAATGAGTCTGAACTTGGAGCCTATCTGGAGCATG
TTAAGGATGCTACACTTAAAGAAACTCTCTGCAACGGTGTTGCCTACCTTCATGATGGAA
CAACTCAGATTGAAAGAACAGTGGTGGAGCAACTTTTCTCATCTGGAGCTGTACAAGTTC
TTGTTGCTTCCCGCAGCCTCTGCTGGGGTCTTAATCTTGCTGCTCATCTTGTTATTGTGA
TGGACACCCAGCATTACAATGGAAAAATACATGCTTATGTGGACTACCCAGTCACAGATG
TGCTGCAGATGATAGGAAGAGCTAATCGGCCACTGAAAGATGAAGAGGGAAAATGTGTTG
TAATGTGCCAAACATCAAAGAAAGATTTTTTCAAAAAGTTTGTCTACGAGCCATTGCCAG
TGGAGTCTCACTTGGACCACTGTCTTCATGACCATTTCAATGCTGAAATTGTGACAAAGA
TCATTGAAAATAAACAGGATGCAGTTGACTATCTTACCTGGACCTTCTTGTACAGGCGCA
TGAGCCAGAATCCGAACTACTACAACTTGCAAGGTGTGTCTCATCGCCATTTGTCTGACA
GTCTGTCTGAACTTGTAGAAAACACTCTTGCTGACCTGGAGCAATCTAAATGTATATCGA
TTGAGGATGAAATGGACATCACCCCATTGAACTTAGCTATGATTGCTGCTTACTACTACA
TCAACTACACAACAATCGAGCTCTTCAGCATGTCCCTGAATGCCAAAACCAAAATAAGAG
GTCTTATTGAAATCATCAGCAATGCAGCAGAGTATGAAAGTATCCAGATCAGACGACATG
AAGACAACACGCTGAAGCAGCTTTTACCCAAAGTTCAATACAAGCCCCAGAACATCAGAT
TTACTGACCCTCATATTAAGACCAACCTTTTGCTGCAAGCTCATCTATCCCGACTGCAGC
TTCCAGCTGAACTACAATCAGATACAGAGCAGATCTTGGGCAAAGCAGTTCGTCTTATTC
AAGCTTGTGTGGATGTACTTTCTTCCAATGGATGGCTTTCACCAGCCTTGGCAGCTATGG
AGCTTGCACAAATGGTCACACAAGCTATGTGGAGCAGAGATTCTTATCTCAAACAACTTC
CACACTTTGGTTCTGACTTGATCAAGAAATGTTCGGATAAGGAAATTGAGAGTGTCTTTG
ACATTCTTGAAATGGAAGATGCAGATCGTGAGGAGCTTCTACAGATGAGTGAGGCACAAA
TGGCAGATGTTGCTCGCTTTTGCAACAGATATCCAAACATCGAACTGTCTTATGATGTGC
AAAACCCTGACAACCTGCATGCAGGCAGTCCAGTAGTGGTGCTGGTTGCCCTGGAACGTG
AAGATGAGGTGGCTGGTCCTGTGATTGCCCCATTTTTCCCACAGAAACGCGAGGAGGGCT
GGTGGGTAGTTGTTGGTGACCCTAAGACAAACAGCCTAATCTCAATCAAGAGGTTGACCC
TTCAGCAAAAGGCCAAGGTAAAACTGGACTTTATACCACCATCAGCTGGCTCCCACTCGT
ACACTCTCTACTTCATGAGTGATGCCTACATGGGCTGTGACCAAGAATACAAACTTACTA
TTAATGTCAGGGAATCTGAAGGGGAGAGCAGTGGCAGCGAATCGGATTAATGTGCCTTTG
TGTATGTTTTTGACTGGCATTGAAACAGTTTAAGGCCTTAAAATTTGATATTATCACCAA
AGTAAACATGAAAACACTTATTTTCATCTTTAAATGTTAAACTTGACA
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[418-664] 2.18E-44 - T[674-886] 2.96E-48 - T[1212-1501] 3.84E-48 - T[1510-1719] 3.28E-42 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[475-686] 1.2E-31 - T[1320-1524] 1.8E-21 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[481-656] 2.2E-25 - T[1326-1486] 7.2E-23 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[488-671] 21.808 - T[1333-1508] 18.085 |
| SMART |
AAA+_ATPase (IPR003593) - T[493-810] 0.18 - T[1338-1513] 2.9 |
| CDD |
Helicase_C (IPR001650) - T[682-856] 2.68283E-15 - T[1605-1701] 6.89157E-9 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[682-919] 11.898 - T[1538-1748] 9.981 |
| Pfam |
Helicase_C (IPR001650) - T[765-856] 4.6E-7 - T[1548-1689] 1.5E-6 |
| SMART |
Helicase_C (IPR001650) - T[766-858] 1.6E-17 - T[1603-1691] 1.9E-13 |
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[886-988] 1.09E-5 - T[1719-1819] 1.41E-7 |
| SMART |
Sec63-dom (IPR004179) - T[977-1282] 2.0E-127 - T[1808-2120] 1.7E-108 |
| Pfam |
Sec63-dom (IPR004179) - T[978-1281] 7.0E-91 - T[1808-2118] 1.1E-77 |
| Gene3D |
C2_domain_sf (IPR035892) - T[1177-1285] 4.0E-48 - T[2011-2132] 1.1E-46 |
| SUPERFAMILY |
Ig_E-set (IPR014756) - T[2012-2124] 6.58E-32 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ASCC3_HUMAN | 42.976 % | 1506 | 0 |
| U520_HUMAN | 77.945 % | 3490 | 0 |
| HFM1_HUMAN | 31.74 % | 326 | 1.13E-90 |