- Molecular Tool 'Titf>Otx-TALEN (Yoshida2017)' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S132.g03890.01.t
Possible name(s)
PABPC1; PABPC3; PABPC4
Gene model
Location
S132 [56,078 / 60,612]
Amino acid sequence
Length: 484
>Phmamm.CG.MTP2014.S132.g03890.01.p
MLLNDKKVFVGKFLTRSERNKKMGERVRQFTNVYIKNFSDKLDDDQLKDMFGKYGCVKSV
AVMKDSNGNSRGFGFVAFETHEEAQNAVEGLNGTEIENSNELLYVGRAQKKQERQNELRS
QFEQQKQDRIQRFQGVNLYVKNLDDNINEEDLREAFNQYGTITSAKIMYECDVSRGFGFV
CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRREDRKAHLTAQYMQRMTNTMGVRMPNQL
MSQSFQAAGAPGYFMPFQGTQRTYVPSHIIRATPRWQTPAQASFQMAGDMRTVGPRGPAG
PAIRPMTTPVGARGNIHPSQHVMQQQVMQPFKYTQSVRNPNMAGYPQPGQTQNQQQPDSG
MQPAVHVQGQEPLTASMLASAQPQEQKQMLGERLYPLIENSHPDLASKITGMLLEIDNSE
LLHMLESRESLKAKVEEAVAVLQAHQHKVAQQARQTRPTPAAQPAVTQEVAAPVPVAVGG
GNQE
Nucleotide sequence
Length: 2,359
>Phmamm.CG.MTP2014.S132.g03890.01.t
GCTCGGGATAATCTTTGTCCTTACCACTATCATTAGCGTTATTAGAAAAACCTACAAAAA
AATTTAAAAATCGTACGAAAACGTACAAAAAAATTGTATTATTTCAAAAAATATTGTGTA
TTCTTTTTCTTGTCGTGAAGAAAAACCACCAGATCGACCAAAATGAACAACAACGCCAAT
TCCACCACTTATCCAATGGCTTCTTTGTATGTTGGTGACTTGCACCCTGATGTAACTGAG
GCCATGCTCTATGAGAAGTTTTCTCAAGCTGGTCCAGTTCTTTCTATCCGTGTTTGTCGG
GATGTCATCACACGTAGATCACTTGGTTATGCTTATGTTAATTTTCAGCAGCCAGCTGAT
GCTGAACGGGCATTGGACACTATGAACTATGATCCAATCAAGGGTCGTCCAATTCGTATC
ATGTGGAGCCAGCGTGACCCTTCTCTCCGCAAATCTGGTGTTGGCAATATCTTCATTAAG
AACTTGGATAAGTCCATCGACAACAAGGCCCTGTATGACACCTTTTCTGCTTTCGGAAAC
ATTCTTTCCTGCAAGGTATGGTGATGTTTTACTAGTACTCAGATTGATGTTGGCAAACTG
TAAATTTATTTTTTGTTTAGGTGTCTTGCAGTGACGGTGTATCCAAAGGTTATGGTTTTG
TTCATTTTGAAACTGAAGAGGCTGCACTCCGTGCCATTGATAAGGTCAATGGCATGTTAT
TGAACGACAAAAAAGTATTTGTCGGAAAGTTTCTTACACGTTCTGAGCGCAACAAGAAGA
TGGGGGAAAGAGTTCGCCAGTTTACGAATGTCTACATTAAAAACTTTTCTGACAAACTGG
ATGATGATCAACTTAAGGATATGTTTGGGAAATATGGCTGTGTTAAAAGTGTTGCTGTTA
TGAAAGATAGTAATGGCAACTCACGTGGCTTTGGTTTTGTGGCCTTTGAGACACATGAGG
AGGCACAAAATGCTGTTGAAGGCCTTAATGGAACAGAAATAGAAAACTCAAATGAGCTCT
TGTATGTTGGCCGCGCTCAAAAGAAACAAGAGCGCCAAAATGAGTTGCGCAGTCAGTTTG
AGCAGCAAAAGCAAGATCGCATTCAGCGATTTCAAGGTGTTAATCTGTATGTGAAAAACT
TGGATGACAACATAAATGAGGAAGATCTTCGTGAGGCTTTCAACCAGTATGGAACCATCA
CAAGTGCCAAGATTATGTACGAATGTGATGTTTCCCGTGGGTTCGGCTTTGTCTGCTTCA
GTTCGCCTGAAGAAGCTACAAAAGCTGTGACTGAGATGAATGGTCGCATTGTTGGCTCCA
AACCACTGTATGTGGCATTGGCCCAGCGCAGAGAAGATCGTAAAGCCCACCTAACTGCTC
AATACATGCAGAGAATGACAAACACTATGGGTGTTCGAATGCCAAACCAGCTGATGAGTC
AGTCGTTCCAAGCAGCTGGGGCTCCAGGATATTTCATGCCTTTCCAGGGTACACAAAGAA
CTTATGTCCCAAGTCATATAATCAGAGCTACACCAAGATGGCAGACACCTGCCCAAGCAA
GCTTCCAGATGGCTGGGGATATGAGAACTGTGGGACCCAGGGGCCCAGCTGGCCCTGCTA
TTCGTCCGATGACCACTCCAGTCGGTGCCAGAGGAAACATTCATCCATCACAACATGTCA
TGCAACAACAAGTCATGCAGCCGTTCAAATACACACAAAGTGTGAGGAACCCCAACATGG
CTGGATATCCACAGCCGGGCCAGACACAAAACCAGCAACAACCTGACTCAGGAATGCAAC
CAGCTGTGCACGTTCAGGGGCAGGAACCACTTACTGCCAGCATGTTGGCTTCTGCTCAGC
CCCAAGAACAGAAACAAATGCTTGGCGAACGTCTTTATCCTCTCATTGAAAACAGCCATC
CAGACCTTGCTTCTAAGATCACTGGAATGTTGCTTGAAATCGACAACTCAGAACTTCTTC
ACATGCTTGAGTCTCGTGAATCACTTAAAGCCAAGGTTGAAGAAGCAGTGGCTGTGCTGC
AGGCCCATCAACATAAAGTTGCTCAGCAAGCGCGTCAGACCAGGCCCACCCCTGCTGCAC
AACCTGCTGTGACCCAAGAAGTAGCTGCACCCGTCCCAGTTGCTGTCGGCGGTGGTAACC
AGGAGTAGAAAAGAAAGCTTTGTCTGCATGTCTGTTTTTGTTGTGTTTACTAAATGTCAT
GAATCTGGTGTTCTTTTCGATCCTAATCTGTTGCTACACCATCAACCTCAGAGTTTTGGA
TTCTTTGGCTGCTTTCATGCAAATTTCTTCTTAACCCCTGAGTTTTCAAATCGCAGGGCT
TCTCTCCTGCTGTCAAAAG
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[11-105] 2.2E-23 - T[106-224] 6.4E-29 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[30-216] 1.96E-48 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[31-110] 19.741 - T[136-212] 19.297 |
| SMART |
RRM_dom (IPR000504) - T[32-106] 2.5E-22 - T[137-208] 5.5E-25 |
| Pfam |
RRM_dom (IPR000504) - T[33-99] 8.9E-21 - T[138-205] 1.7E-19 |
| SUPERFAMILY |
PABP-dom (IPR036053) - T[320-454] 2.88E-45 |
| ProSiteProfiles |
PABP_HYD (IPR002004) - T[370-447] 22.035 |
| Pfam |
PABP_HYD (IPR002004) - T[376-442] 9.9E-30 |
| SMART |
PABP_HYD (IPR002004) - T[382-445] 3.2E-38 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PABP1_HUMAN | 56.965 % | 491 | 1.61E-169 |
| PABP4_HUMAN | 54.527 % | 475 | 4.92E-163 |
| PABP3_HUMAN | 53.653 % | 456 | 1.37E-155 |