- Molecular Tool 'Titf>Otx-TALEN (Yoshida2017)' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S132.g03890.02.t
Possible name(s)
PABPC1; PABPC3; PABPC4
Gene model
Location
S132 [56,269 / 60,165]
Amino acid sequence
Length: 646
>Phmamm.CG.MTP2014.S132.g03890.02.p
MNNNANSTTYPMASLYVGDLHPDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVN
FQQPADAERALDTMNYDPIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDT
FSAFGNILSCKVSCSDGVSKGYGFVHFETEEAALRAIDKVNGMLLNDKKVFVGKFLTRSE
RNKKMGERVRQFTNVYIKNFSDKLDDDQLKDMFGKYGCVKSVAVMKDSNGNSRGFGFVAF
ETHEEAQNAVEGLNGTEIENSNELLYVGRAQKKQERQNELRSQFEQQKQDRIQRFQGVNL
YVKNLDDNINEEDLREAFNQYGTITSAKIMYECDVSRGFGFVCFSSPEEATKAVTEMNGR
IVGSKPLYVALAQRREDRKAHLTAQYMQRMTNTMGVRMPNQLMSQSFQAAGAPGYFMPFQ
GTQRTYVPSHIIRATPRWQTPAQASFQMAGDMRTVGPRGPAGPAIRPMTTPVGARGNIHP
SQHVMQQQVMQPFKYTQSVRNPNMAGYPQPGQTQNQQQPDSGMQPAVHVQGQEPLTASML
ASAQPQEQKQMLGERLYPLIENSHPDLASKITGMLLEIDNSELLHMLESRESLKAKVEEA
VAVLQAHQHKVAQQARQTRPTPAAQPAVTQEVAAPVPVAVGGGNQE
Nucleotide sequence
Length: 1,941
>Phmamm.CG.MTP2014.S132.g03890.02.t
ATGAACAACAACGCCAATTCCACCACTTATCCAATGGCTTCTTTGTATGTTGGTGACTTG
CACCCTGATGTAACTGAGGCCATGCTCTATGAGAAGTTTTCTCAAGCTGGTCCAGTTCTT
TCTATCCGTGTTTGTCGGGATGTCATCACACGTAGATCACTTGGTTATGCTTATGTTAAT
TTTCAGCAGCCAGCTGATGCTGAACGGGCATTGGACACTATGAACTATGATCCAATCAAG
GGTCGTCCAATTCGTATCATGTGGAGCCAGCGTGACCCTTCTCTCCGCAAATCTGGTGTT
GGCAATATCTTCATTAAGAACTTGGATAAGTCCATCGACAACAAGGCCCTGTATGACACC
TTTTCTGCTTTCGGAAACATTCTTTCCTGCAAGGTGTCTTGCAGTGACGGTGTATCCAAA
GGTTATGGTTTTGTTCATTTTGAAACTGAAGAGGCTGCACTCCGTGCCATTGATAAGGTC
AATGGCATGTTATTGAACGACAAAAAAGTATTTGTCGGAAAGTTTCTTACACGTTCTGAG
CGCAACAAGAAGATGGGGGAAAGAGTTCGCCAGTTTACGAATGTCTACATTAAAAACTTT
TCTGACAAACTGGATGATGATCAACTTAAGGATATGTTTGGGAAATATGGCTGTGTTAAA
AGTGTTGCTGTTATGAAAGATAGTAATGGCAACTCACGTGGCTTTGGTTTTGTGGCCTTT
GAGACACATGAGGAGGCACAAAATGCTGTTGAAGGCCTTAATGGAACAGAAATAGAAAAC
TCAAATGAGCTCTTGTATGTTGGCCGCGCTCAAAAGAAACAAGAGCGCCAAAATGAGTTG
CGCAGTCAGTTTGAGCAGCAAAAGCAAGATCGCATTCAGCGATTTCAAGGTGTTAATCTG
TATGTGAAAAACTTGGATGACAACATAAATGAGGAAGATCTTCGTGAGGCTTTCAACCAG
TATGGAACCATCACAAGTGCCAAGATTATGTACGAATGTGATGTTTCCCGTGGGTTCGGC
TTTGTCTGCTTCAGTTCGCCTGAAGAAGCTACAAAAGCTGTGACTGAGATGAATGGTCGC
ATTGTTGGCTCCAAACCACTGTATGTGGCATTGGCCCAGCGCAGAGAAGATCGTAAAGCC
CACCTAACTGCTCAATACATGCAGAGAATGACAAACACTATGGGTGTTCGAATGCCAAAC
CAGCTGATGAGTCAGTCGTTCCAAGCAGCTGGGGCTCCAGGATATTTCATGCCTTTCCAG
GGTACACAAAGAACTTATGTCCCAAGTCATATAATCAGAGCTACACCAAGATGGCAGACA
CCTGCCCAAGCAAGCTTCCAGATGGCTGGGGATATGAGAACTGTGGGACCCAGGGGCCCA
GCTGGCCCTGCTATTCGTCCGATGACCACTCCAGTCGGTGCCAGAGGAAACATTCATCCA
TCACAACATGTCATGCAACAACAAGTCATGCAGCCGTTCAAATACACACAAAGTGTGAGG
AACCCCAACATGGCTGGATATCCACAGCCGGGCCAGACACAAAACCAGCAACAACCTGAC
TCAGGAATGCAACCAGCTGTGCACGTTCAGGGGCAGGAACCACTTACTGCCAGCATGTTG
GCTTCTGCTCAGCCCCAAGAACAGAAACAAATGCTTGGCGAACGTCTTTATCCTCTCATT
GAAAACAGCCATCCAGACCTTGCTTCTAAGATCACTGGAATGTTGCTTGAAATCGACAAC
TCAGAACTTCTTCACATGCTTGAGTCTCGTGAATCACTTAAAGCCAAGGTTGAAGAAGCA
GTGGCTGTGCTGCAGGCCCATCAACATAAAGTTGCTCAGCAAGCGCGTCAGACCAGGCCC
ACCCCTGCTGCACAACCTGCTGTGACCCAAGAAGTAGCTGCACCCGTCCCAGTTGCTGTC
GGCGGTGGTAACCAGGAGTAG
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[2-94] 9.7E-26 - T[95-180] 1.2E-21 - T[181-267] 3.6E-23 - T[268-385] 8.9E-29 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[12-181] 3.74E-49 - T[192-378] 3.33E-48 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[13-91] 17.916 - T[101-177] 16.159 - T[193-272] 19.741 - T[298-374] 19.297 |
| TIGRFAM |
PABP_1234 (IPR006515) - T[13-605] 3.8E-236 |
| SMART |
RRM_dom (IPR000504) - T[14-87] 5.9E-23 - T[102-173] 9.0E-22 - T[194-268] 2.5E-22 - T[299-370] 5.5E-25 |
| Pfam |
RRM_dom (IPR000504) - T[15-85] 1.4E-20 - T[103-169] 9.2E-19 - T[195-261] 1.3E-20 - T[300-367] 2.5E-19 |
| SMART |
RRM_dom_euk (IPR003954) - T[102-173] 6.0 - T[194-266] 1.8 - T[299-370] 1.6 |
| SUPERFAMILY |
PABP-dom (IPR036053) - T[482-616] 1.01E-45 |
| ProSiteProfiles |
PABP_HYD (IPR002004) - T[532-609] 22.035 |
| Pfam |
PABP_HYD (IPR002004) - T[538-604] 1.5E-29 |
| SMART |
PABP_HYD (IPR002004) - T[544-607] 3.2E-38 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PABP1_HUMAN | 64.375 % | 793 | 0 |
| PABP4_HUMAN | 62.326 % | 771 | 0 |
| PABP3_HUMAN | 59.718 % | 725 | 0 |