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  1. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S135.g03947.02.t

Possible name(s)

SMCHD1

Gene model

Phmamm.CG.MTP2014.S135.g03947

Location

S135 [4,435 / 6,881]

Sequences

Amino acid sequence

Length: 274

>Phmamm.CG.MTP2014.S135.g03947.02.p
SERIEFQPHYDTLIKSGIYEYYASEGHINPLPFAFAELIDNALAATVKNKGPRCIEISLH
INESTGKHALCVYDNGEGMSSRQLNNWAIYRLSKFNRKERHERVNLVGNDNEDKSEDQPP
DGAPKSLNSDISWFGVGGKQAIFFIGNATRIITKPRGSCDVHEFTMSKDEFRRKERNREA
IFAGYIRNRKPGDASHVAKSDKMTRDFISAEGNEGFTRIIVSGLSPSHVSFVKHGFNIWT
RQLAHIYHYYIHGPEGNSAISRKRKNIGALDVDI

Nucleotide sequence

Length: 824

>Phmamm.CG.MTP2014.S135.g03947.02.t
TATCCGAGAGAATTGAATTTCAACCTCATTACGATACATTGATAAAAAGTGGAATATATG
AGTATTATGCCAGTGAAGGTCACATTAATCCGCTACCTTTTGCGTTTGCTGAACTGATTG
ACAATGCATTAGCAGCTACTGTCAAGAATAAAGGCCCCCGATGCATTGAGATAAGCCTGC
ACATTAACGAGTCAACCGGCAAACATGCATTGTGCGTTTACGACAATGGAGAGGGTATGT
CATCACGGCAACTCAACAACTGGGCAATTTACAGACTTTCGAAGTTTAACAGAAAGGAAC
GACATGAAAGAGTGAATTTAGTTGGAAATGACAATGAAGATAAGTCTGAAGACCAACCAC
CAGATGGAGCTCCTAAGTCACTCAACAGTGACATCTCATGGTTTGGTGTTGGTGGAAAAC
AGGCAATTTTCTTCATTGGAAATGCAACCAGAATTATCACGAAACCGAGAGGATCATGTG
ATGTCCATGAGTTCACGATGTCGAAAGATGAGTTTCGACGTAAGGAGAGAAACAGAGAGG
CAATATTCGCGGGATATATCAGAAACAGAAAGCCTGGTGATGCTTCTCATGTTGCTAAGT
CAGATAAGATGACTCGAGATTTTATCAGTGCAGAAGGAAACGAAGGTTTCACTCGGATTA
TAGTTAGTGGTTTGTCTCCTTCTCATGTCAGTTTCGTGAAACATGGATTTAATATTTGGA
CAAGGCAGCTAGCGCACATCTATCATTATTATATTCATGGACCTGAAGGCAATTCTGCAA
TTTCAAGAAAACGCAAAAACATTGGTGCTTTGGATGTTGACATA

InterProScan

Gene3D
HATPase_C_sf (IPR036890) - T[1-231] 7.7E-12
SUPERFAMILY
HATPase_C_sf (IPR036890) - T[2-98] 7.33E-10
CDD
HATPase_C (IPR003594) - T[34-86] 1.15214E-4

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SMHD1_HUMAN 53.261 % 308 6.18E-96