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TRANSCRIPT CARD

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  1. Clone 'cima876512' > 
  2. Transcript 'KH2012:KH.L152.46.v1...' > 
  3. Transcript 'Phmamm.CG.MTP2014.S2...' > 
  4. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S135.g03947.04.t

Possible name(s)

SMCHD1

Gene model

Phmamm.CG.MTP2014.S135.g03947

Location

S135 [4,482 / 9,089]

Sequences

Amino acid sequence

Length: 353

>Phmamm.CG.MTP2014.S135.g03947.04.p
NMDNDEEDAFVYVYDRRSANVDSEKKKIHIGGVFAFDVFLEKIVKKFSIRSRESFLITTT
GRNVICDDDTFVTMIESGDTLYLLKYLDQPLGAPVSERIEFQPHYDTLIKSGIYEYYASE
GHINPLPFAFAELIDNALAATVKNKGPRCIEISLHINESTGKHALCVYDNGEGMSSRQLN
NWAIYRLSKFNRKERHERVNLVGNDNEDKSEDQPPDGAPKSLNSDISWFGVGGKQAIFFI
GNATRIITKPRGSCDVHEFTMSKDEFRRKERNREAIFAGYIRNRKPGDASHVAKSDKMTR
DFISAEGNEGFTRIIVSGLSPSHVSFVKHGFNIWTRQLAHIYHYYIHGPEGNS

Nucleotide sequence

Length: 1,060

>Phmamm.CG.MTP2014.S135.g03947.04.t
AACATGGATAATGACGAAGAAGATGCTTTTGTTTATGTTTACGACCGGCGGAGTGCAAAT
GTTGATTCTGAGAAAAAGAAAATTCATATTGGTGGAGTTTTTGCCTTCGATGTATTTTTG
GAAAAGATTGTGAAAAAATTCTCCATTAGGTCAAGAGAATCATTCTTGATAACAACGACA
GGACGGAATGTGATTTGTGATGATGACACATTTGTTACAATGATTGAATCTGGGGACACC
CTTTACCTCCTGAAATATCTCGATCAACCTTTGGGAGCTCCTGTATCCGAGAGAATTGAA
TTTCAACCTCATTACGATACATTGATAAAAAGTGGAATATATGAGTATTATGCCAGTGAA
GGTCACATTAATCCGCTACCTTTTGCGTTTGCTGAACTGATTGACAATGCATTAGCAGCT
ACTGTCAAGAATAAAGGCCCCCGATGCATTGAGATAAGCCTGCACATTAACGAGTCAACC
GGCAAACATGCATTGTGCGTTTACGACAATGGAGAGGGTATGTCATCACGGCAACTCAAC
AACTGGGCAATTTACAGACTTTCGAAGTTTAACAGAAAGGAACGACATGAAAGAGTGAAT
TTAGTTGGAAATGACAATGAAGATAAGTCTGAAGACCAACCACCAGATGGAGCTCCTAAG
TCACTCAACAGTGACATCTCATGGTTTGGTGTTGGTGGAAAACAGGCAATTTTCTTCATT
GGAAATGCAACCAGAATTATCACGAAACCGAGAGGATCATGTGATGTCCATGAGTTCACG
ATGTCGAAAGATGAGTTTCGACGTAAGGAGAGAAACAGAGAGGCAATATTCGCGGGATAT
ATCAGAAACAGAAAGCCTGGTGATGCTTCTCATGTTGCTAAGTCAGATAAGATGACTCGA
GATTTTATCAGTGCAGAAGGAAACGAAGGTTTCACTCGGATTATAGTTAGTGGTTTGTCT
CCTTCTCATGTCAGTTTCGTGAAACATGGATTTAATATTTGGACAAGGCAGCTAGCGCAC
ATCTATCATTATTATATTCATGGACCTGAAGGCAATTCTG

InterProScan

Gene3D
HATPase_C_sf (IPR036890) - T[95-322] 1.5E-11
SUPERFAMILY
HATPase_C_sf (IPR036890) - T[96-193] 1.19E-9
CDD
HATPase_C (IPR003594) - T[129-181] 1.42858E-4

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SMHD1_HUMAN 49.275 % 345 1.2E-107