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TRANSCRIPT CARD

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  1. Clone 'cilv021f14'
  2. Transcript 'KH2012:KH.C7.584.v2....'
  3. Transcript 'Mooccu.CG.ELv1_2.S70...'
  4. Transcript 'Cisavi.CG.ENS81.R5.1...'
  5. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1370.g14627.01.t

Possible name(s)

HOXA1; MNX1; PDX1

Location

S1370 [21,672 / 25,258]

Sequences

Amino acid sequence

Length: 336

>Phmamm.CG.MTP2014.S1370.g14627.01.p
MMLSTSNTPFVVRLRHDDDVTASASVSEARFGSPPEIKNAYDSDTDAKSSASRRLSVSPQ
SDISPQRDANAADLSRFCRPGFKSEPEPKTTSFSIDALLRNDAPKSSDAEKIKLPSLLQN
YPHHSLLPTASKSSFERERISRPIPMYSSTSPGSFHHNYSSLNLAKNSPDLAMPSSVSPS
SSSPLQSPSGSHSPGSQSSHLQREESNPITMGFYSHPPVESFLPGGALPHHLPGGHFGFP
YSMGGRFPPVPLPTSYAVNPFRSQIPIWNEAMLRSLSEFAGVAHPGLLSKSRRPRTAFTS
QQLLELERQFKLNKYLSRPKRFEVATSLQLTETQVR

Nucleotide sequence

Length: 1,011

>Phmamm.CG.MTP2014.S1370.g14627.01.t
ATGATGCTAAGCACATCCAACACGCCTTTCGTCGTCAGATTACGTCATGATGATGACGTC
ACAGCCTCTGCGTCGGTTTCCGAAGCCAGATTCGGATCTCCGCCGGAAATAAAAAACGCC
TATGACTCTGATACGGACGCAAAATCCTCCGCGTCTAGAAGACTTTCTGTGTCTCCGCAA
TCCGACATATCTCCTCAGAGGGACGCCAACGCCGCGGATTTGAGCAGGTTCTGCCGCCCC
GGATTCAAGAGCGAGCCTGAACCGAAAACTACGAGCTTTTCTATAGATGCTTTGTTGAGA
AACGATGCCCCAAAGTCATCAGATGCAGAAAAAATTAAACTCCCTTCACTGCTTCAGAAC
TATCCACATCACAGTTTGCTCCCAACAGCATCCAAGAGCAGTTTTGAAAGGGAGAGAATC
TCAAGACCGATCCCTATGTACTCTTCGACATCCCCGGGATCATTCCATCACAACTACTCA
AGTTTAAACCTTGCAAAAAATTCCCCAGATCTCGCAATGCCTTCCTCTGTATCCCCATCC
TCCTCATCTCCTCTGCAATCTCCATCCGGCTCCCACTCCCCGGGATCACAGTCATCCCAT
CTTCAAAGAGAAGAATCGAATCCGATTACAATGGGATTTTACTCCCATCCTCCGGTGGAA
TCTTTCCTACCGGGAGGAGCTCTTCCACATCATCTTCCAGGAGGTCATTTTGGTTTTCCT
TACTCCATGGGGGGAAGATTTCCGCCCGTTCCTCTTCCGACATCGTATGCCGTGAATCCC
TTCCGATCCCAAATCCCAATATGGAATGAAGCGATGTTGAGAAGCCTCAGTGAGTTTGCA
GGTGTCGCTCACCCGGGTCTGCTGAGCAAATCCCGACGCCCGCGAACTGCATTTACGTCA
CAGCAGCTCTTGGAGCTCGAAAGACAGTTCAAGCTGAATAAGTATCTCTCAAGGCCGAAG
CGCTTCGAAGTCGCAACCTCGCTCCAGCTCACCGAAACTCAGGTACGATGA

InterProScan

SUPERFAMILY
Homeobox-like_sf (IPR009057) - T[276-336] 8.13E-14
ProSiteProfiles
Homeobox_dom (IPR001356) - T[289-336] 13.831
SMART
Homeobox_dom (IPR001356) - T[291-336] 8.5E-4
Pfam
Homeobox_dom (IPR001356) - T[292-336] 2.1E-11
CDD
Homeobox_dom (IPR001356) - T[292-336] 2.86315E-12

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
MNX1_HUMAN 73.846 % 95.9 3.94E-22