- Transcript 'Moocci.CG.ELv1_2.S23...' >
- Transcript 'KH2012:KH.S816.4.v1....' >
- Transcript 'KH2012:KH.C3.566.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S1385.g14656.01.t
Possible name(s)
SRSF4; SRSF5; SRSF6
Gene model
Location
S1385 [3,908 / 5,386]
Amino acid sequence
Length: 289
>Phmamm.CG.MTP2014.S1385.g14656.01.p
LIMSGCRIFLGGLSNRATEGDVERFFDGFGKIREVNLKQGYGFVEFDDHRDADDAVYEMN
NQTLAGSRVTVEHAKGTPRRGGGGGGGGSFGGGRRDNYGGGGGGGYGGRDRGGYGGRDRG
GGGYGDRYGRDDRGGGGRSFGGRYAPPSRTKYRVIVENLSSRVTWQDLKDYLRGAGGEVT
YAEANQKTRNEGVVDFASYDDMKNAISKLDDTELCGRKIRLYEEKRSPSRSRSRSPIRSR
SRDRSRRDSNRSRSPSPRHSRSPDPAEKSRDMSKSPDRSRSYSKSPARD
Nucleotide sequence
Length: 1,478
>Phmamm.CG.MTP2014.S1385.g14656.01.t
AGCTCATCATGTCTGGATGCAGAATTTTTTTGGGTGGTTTAAGCAATCGTGCTACAGAAG
GAGATGTGGAACGCTTCTTTGATGGTTTTGGCAAGATCAGGGAGGTCAACTTAAAGCAAG
GATATGGCTTTGTGGAATTCGATGATCATCGAGATGCTGATGATGCTGTGTATGAAATGA
ACAATCAAACACTTGCTGGCAGTCGTGTGACTGTTGAGCATGCTAAAGGTACCCCTAGAA
GAGGTGGGGGAGGAGGTGGTGGTGGTAGTTTTGGAGGTGGACGAAGGGACAACTATGGAG
GTGGTGGGGGAGGCGGTTATGGTGGCCGCGACCGAGGTGGTTATGGAGGTCGTGATAGAG
GCGGTGGTGGTTATGGTGACCGGTATGGCAGAGATGATCGAGGCGGTGGTGGTCGCTCAT
TTGGAGGCAGATATGCTCCACCTTCGCGTACAAAATATCGGGTGATTGTTGAGAATCTTT
CCTCTCGTGTCACATGGCAAGATCTCAAAGATTACTTACGAGGTGCAGGTGGTGAAGTCA
CTTATGCAGAGGCCAACCAGAAAACTCGCAACGAAGGTGTGGTGGATTTTGCCTCTTATG
ATGATATGAAAAATGCCATTTCCAAACTTGATGACACTGAGCTTTGTGGTCGCAAAATTC
GCTTGTATGAGGAAAAACGATCTCCGAGTCGGTCCAGGTCCAGAAGTCCAATTCGATCCC
GATCAAGAGATAGATCTCGCCGTGACAGCAATCGTAGTCGATCACCATCTCCAAGACATT
CAAGATCCCCAGATCCAGCTGAAAAATCTCGTGATATGTCCAAAAGTCCAGACCGCAGTC
GTTCCTACAGCAAGAGTCCTGCCAGGGATTAAATAAACAAACTTTTAAAATACAGTTGTG
TAATCTGGTGAACAGTTTAGAAACGAATTGTACCCATGATGTGATTTTAACATTGGTTTT
ACTAAATCATGCCAAACTGGATGTATTTCGTTGAAGTTTTCATGTCTTCACATCTTTTAT
GCCTTAATTCTTCTATTAATATTTTGTGGACTGCCACCCTTGAATAAATTAATATGTGTA
CAAAAACCTATCCACTACCAAAATTCCACAATGTGGTCAGTTACAGCTCTTGTACATAAT
TGTGTTATGTTCATTGACTTAATAAATTTTGGTTCAACTTTCTTCATTTGTTGTTTCAGA
ATAAGATTCTCTTTCAAAACATGAATTAAATTTTTACTTATAACTGTTTGTTGGTGTAAA
TAAGTTCATATTATTATTTCACAAAGATGAGTTCCCTGCGATTTGCACTTGCAAAACTTT
TGAAAGGAAAGATCAACGCAGTAAGTTTTGGGTTTTACTTATTTTATAGATGTAACATTG
TTTTTGGTCAAAAGAAAACATGTCACAAACTTTTCAATTATAAGGGTGAAGGTTGTTGTA
AGCAGCTTATTTTAAACTTAGCTATTTAAAAAGTGGAA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[3-82] 4.1E-21 - T[151-225] 3.3E-21 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[5-221] 7.47E-33 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[6-76] 16.79 - T[152-226] 12.134 |
| SMART |
RRM_dom (IPR000504) - T[7-72] 4.3E-17 - T[153-222] 3.6E-10 |
| CDD |
RRM1_SRSF4-like (IPR035585) - T[7-76] 6.99107E-34 |
| Pfam |
RRM_dom (IPR000504) - T[8-69] 3.9E-15 - T[154-220] 4.6E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SRSF4_HUMAN | 53.881 % | 208 | 7.2E-64 |
| SRSF6_HUMAN | 49.315 % | 182 | 1.16E-55 |
| SRSF5_HUMAN | 48.869 % | 181 | 5.03E-56 |