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  1. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S138.g04015.01.t

Possible name(s)

OPN1LW; OPN1MW2; OPN1MW3

Gene model

Phmamm.CG.MTP2014.S138.g04015

Location

S138 [67,095 / 69,301]

Sequences

Amino acid sequence

Length: 286

>Phmamm.CG.MTP2014.S138.g04015.01.p
VLRQPLNYIIVNLAVADLLSALFGGVISVMANGAGYFFWGKTMCQVEGYVVSNFGVTGLN
CIAVMAFERYFVICKPFGPVRFEDKHAYIGIASTWIWAIIWNTPPLIWWDGYDPEGLGTS
CAPNWFVKGYRERMFIILYFVFCFLIPLLIIVLCYGKLIWTLRQIAKESSLAGSTSPEAE
VTKMVVTMVAAFVLCWLPYASFAMYNVVNPDAQIDYSLGAAPAFFAKTATIYNPLIYIGL
NRQFRDCVIRMFFGGRNPWSDELATSQVSSQGSQMTTVSSNKVGPA

Nucleotide sequence

Length: 861

>Phmamm.CG.MTP2014.S138.g04015.01.t
GTTTTGCGTCAACCTCTCAACTACATCATTGTGAACTTGGCCGTGGCCGATCTGCTAAGT
GCATTGTTCGGAGGAGTAATCAGTGTCATGGCTAATGGTGCTGGCTACTTCTTCTGGGGA
AAGACAATGTGTCAAGTTGAAGGCTACGTGGTGTCTAATTTCGGTGTTACCGGCCTCAAC
TGCATTGCTGTAATGGCATTCGAAAGATACTTTGTCATTTGCAAGCCATTTGGTCCAGTC
AGATTTGAAGACAAGCATGCGTATATTGGTATCGCCTCAACATGGATTTGGGCAATTATT
TGGAACACACCTCCACTTATTTGGTGGGACGGATATGACCCCGAAGGACTTGGTACCAGT
TGTGCTCCAAACTGGTTTGTTAAAGGATACAGGGAGCGAATGTTTATTATTCTCTACTTC
GTCTTCTGCTTCCTTATTCCGCTTCTCATCATTGTCCTCTGCTACGGAAAACTGATTTGG
ACTCTTCGCCAGATTGCCAAAGAAAGTTCCCTTGCAGGAAGCACAAGCCCTGAAGCCGAA
GTAACAAAGATGGTGGTGACTATGGTGGCAGCTTTTGTGTTATGTTGGCTTCCCTACGCT
TCATTTGCCATGTACAATGTTGTTAACCCTGATGCACAGATCGACTATTCACTTGGTGCT
GCTCCGGCCTTCTTTGCAAAGACTGCGACAATATACAACCCTCTTATATACATCGGTCTG
AATCGACAGTTTCGCGATTGTGTGATTCGGATGTTCTTCGGTGGACGCAATCCATGGAGT
GACGAGTTGGCAACGAGCCAGGTCAGCTCACAGGGATCTCAGATGACAACTGTCAGTAGC
AACAAAGTTGGACCGGCATAA

InterProScan

ProSiteProfiles
GPCR_Rhodpsn_7TM (IPR017452) - T[1-237] 33.993
Pfam
GPCR_Rhodpsn (IPR000276) - T[2-237] 2.6E-39
PRINTS
GPCR_Rhodpsn (IPR000276) - T[6-27] 5.0E-33 - T[51-73] 5.0E-33 - T[86-107] 5.0E-33 - T[136-159] 5.0E-33 - T[181-205] 5.0E-33 - T[219-245] 5.0E-33
ProSitePatterns
GPCR_Rhodpsn (IPR000276) - T[57-73] .
ProSitePatterns
Retinal_BS (IPR027430) - T[221-237] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
OPSR_HUMAN 45.149 % 239 1.45E-77
OPSG3_HUMAN 47.388 % 236 2.42E-76
OPSG_HUMAN 47.388 % 236 2.42E-76