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  1. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1416.g14737.01.t

Possible name(s)

NLRC3; RNH1

Location

S1416 [16,250 / 20,866]

Sequences

Amino acid sequence

Length: 609

>Phmamm.CG.MTP2014.S1416.g14737.01.p
MRRIIIYVILKHPDEEFETDTEILTKILIEFSQMKERVLNIEGLARLAWDQTRNLAGPEE
NYGDLSMFKSTYHDKAAHFEINILKKNDVFTHDVWKFYFAALHAALSVPKQQVYSFVKEF
SAKSCPVIQYMFGFLNPQIQMELGKVLKNAKLEGRTQLLTTILLISYIIQTKSHKNELNC
YSWVHEVQKQEIVKKIAHHFLSSDVEVSLPARSCTKSYFPNSAMAGLTDLICQSKSTHIL
HFSRVKLAQGSLKILTKYLHKVDRLKFRNCHVSADNIRHLSAGIDNSDKPMNKLSLQFTP
IHDDGARALATCIHKIEQLVLLKCGITSNGTRALSSAISKRANPIRQLTLSCNRIEDDGA
VALAICIPYIDQLYLYNCGITSKGTRALSSAISKLEKPMENLSLWGNCIGNKGAKYLATC
IHNIDELDITNCEITDGGIINLSSAIDKRVYQIKYVALDENHFGKEGAEKFASCLHNIKD
SNQYTMTRGLSRGVIEILNFKLKPLKDADDYEFENDTSRVVASEGARLEVDDCTVDIPKD
TLDQPTTVNIISCYGNENNPDQLSPMLQMEPNGFRLKNRVPVTVPFCGDPNNLDEVEVHG
QAYWKTSTG

Nucleotide sequence

Length: 1,830

>Phmamm.CG.MTP2014.S1416.g14737.01.t
ATGCGTAGGATCATTATCTATGTAATTTTAAAACATCCTGACGAAGAATTTGAAACTGAC
ACCGAAATATTAACAAAAATTTTAATTGAATTTAGTCAAATGAAAGAACGAGTTTTAAAC
ATTGAAGGACTAGCACGTTTGGCATGGGACCAGACGCGCAATTTAGCAGGGCCAGAGGAA
AATTATGGGGATTTGTCAATGTTTAAGTCAACATATCATGACAAAGCAGCCCATTTTGAA
ATTAATATTTTGAAAAAGAATGATGTTTTTACTCACGATGTTTGGAAGTTTTACTTTGCC
GCGTTACATGCAGCACTTTCCGTTCCGAAGCAACAAGTGTATAGTTTTGTGAAAGAGTTT
TCGGCTAAGAGTTGCCCAGTCATCCAATACATGTTTGGTTTTCTTAATCCACAAATCCAA
ATGGAACTTGGTAAAGTTCTAAAGAACGCAAAGTTGGAGGGTAGAACACAACTATTGACA
ACTATCTTACTTATTTCTTACATTATACAAACCAAGTCGCACAAAAACGAACTAAATTGT
TACTCCTGGGTGCACGAAGTGCAAAAGCAAGAAATCGTCAAAAAAATAGCACATCACTTT
TTATCGTCGGATGTTGAAGTCAGCTTGCCTGCTCGCTCTTGTACTAAATCTTATTTTCCA
AACTCAGCGATGGCTGGTTTGACGGATTTAATCTGTCAGTCAAAATCAACTCACATCTTA
CATTTCTCACGTGTCAAACTGGCTCAGGGTTCTCTAAAAATCCTGACCAAATATCTACAC
AAGGTAGATAGATTGAAATTTCGGAACTGTCATGTCTCAGCAGACAACATTCGACATCTT
TCTGCAGGAATTGATAACTCGGACAAACCAATGAACAAGTTGTCACTTCAATTTACCCCA
ATCCACGATGATGGGGCTAGAGCGTTGGCAACATGCATTCACAAAATCGAGCAACTCGTG
CTTTTAAAGTGTGGAATCACCAGCAATGGAACAAGAGCACTGTCATCAGCCATAAGCAAA
CGGGCAAACCCGATAAGACAACTAACGCTCAGCTGCAATCGAATTGAAGATGATGGAGCA
GTTGCTCTAGCAATTTGCATACCTTATATCGACCAACTCTATCTTTACAACTGTGGAATT
ACCAGCAAAGGAACTAGAGCATTGTCATCAGCTATCAGCAAGCTGGAAAAACCGATGGAA
AACTTGTCTCTCTGGGGAAATTGTATAGGAAACAAAGGGGCTAAATATTTAGCAACTTGT
ATACACAACATTGATGAACTTGATATTACAAACTGTGAAATCACTGATGGTGGCATCATC
AACTTGTCATCAGCCATTGACAAAAGAGTGTATCAGATAAAGTATGTAGCATTGGACGAA
AATCATTTCGGTAAAGAAGGCGCAGAAAAGTTTGCCTCTTGTCTGCACAACATCAAAGAT
AGTAATCAATATACAATGACCCGAGGGCTTTCTAGAGGAGTAATTGAAATTCTAAATTTT
AAACTTAAACCTCTGAAAGACGCTGACGACTACGAGTTTGAAAACGACACGTCAAGAGTT
GTTGCATCAGAGGGAGCTAGACTTGAAGTTGATGATTGTACTGTTGACATTCCGAAAGAC
ACATTGGACCAACCAACAACAGTCAATATCATTTCTTGTTATGGCAATGAGAACAATCCG
GACCAGCTGAGCCCTATGCTTCAAATGGAACCAAATGGTTTTCGATTGAAGAATCGTGTT
CCGGTCACTGTACCATTTTGCGGCGACCCGAATAATCTCGATGAGGTTGAAGTACATGGT
CAAGCATATTGGAAAACTTCCACCGGTTAA

InterProScan

Gene3D
LRR_dom_sf (IPR032675) - T[216-367] 6.5E-20 - T[368-488] 4.5E-19
Pfam
Leu-rich_rpt (IPR001611) - T[346-364] 0.015 - T[400-418] 1.5 - T[426-443] 0.69

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value





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