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TRANSCRIPT CARD

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  1. Transcript 'Boleac.CG.SB_v3.S0.g...' > 
  2. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S14.g00597.01.t

Possible name(s)

DNA2; IGHMBP2; UPF1

Gene model

Phmamm.CG.MTP2014.S14.g00597

Location

S14 [8,650 / 26,420]

Sequences

Amino acid sequence

Length: 1,114

>Phmamm.CG.MTP2014.S14.g00597.01.p
MLSHDFFGTVSAKKSKAAKESTVDLTESINVKVENPCLTKTSKTTGLEPTTPSNDYILGS
ENNLKSTSDSHTPNPVLRPHSKISKHHLKVDNGGNKDTEDAEATVICSEEKDFSNVMAEE
KKTNEINPCASSSMVTDGDACAAISHQTVTDTTNTVTGFEAFDGLDDDDDLFGEALQKLD
TLSEINLKMQKGPRLRQDLNLEPGDVVNVVQDEKETALPENVINITTKKNLLVHHPNVLI
SGTTVSNALGCLRRAVLSERFKNTERATDDSKISPVMFVGTVVHSLFQSAIAYNGKLNAE
ELLEMTKETVHDPRYMADIITLNTTHEEIVSLVQPYISYIIKWIDQYSSIVVPANSGQIQ
FCLPPNVWESQPSGKRQMTHKFKAKIAMNEIKDIEENVWSPRYGLKGKIDVTGEFAIREI
GGKIQKKSIIPLELKTGKDSHSMEHHLQVADFLRKTVKKSIENGGTTESFITKPLPETID
NLRSCKWCSQLRNCSLVYHSVDKSQTRHQPAPELNLLMTQFVSHLSDNDFAYFEHWMTCM
LLESQESTKKNQKLRFWLKTPAERSSEGTCLTDLRLAGPPVNIDNKNVYLQTFKRNKISE
IKEKLPFSPGESVLISGFEPEFIALASGTIIKITDEFITIHTTRDLSKYPSDMKYSLDNQ
VWMSQISLQSSLSNLSLLMDLDEHYYRLRRLIIGHEEPTFGKNLDFIPRSAKEEVASMLR
GLNRTQRQAIKRVLLSNEYTLVVGMPGSGKTTTIVAMIRILLLCGLRVLVSSYTHSAVDN
LLIKLVKYKVDFLRLGQSSSIHPTVLPFSEQASECKEPEQLKKLYHDARVVGCTCLAIYS
HAFFQIPGQPNPLFDVCIVDEASQIAQPACLSPLLHSKRFVLVGYHKQLPPLVVSSEARQ
MGADESLFRRLTIHKPALCELTLQYRMNSDIMALSNHVTYEGRLECAHESVATATVKLDN
IDAVKTELKDESENSWLIRTLDVKTSVLFLDTSKCGCRGSQIGIIAPFRKQLQAIEEEVQ
KIAADDVGDIEINTVDKYQGRDKSVILLSFVRSKKDELGEKKGELLNDWRRLNVALTRAK
HKLIMVGCIRSLNEYEPCKKMIEYLQTNQLILNL

Nucleotide sequence

Length: 3,345

>Phmamm.CG.MTP2014.S14.g00597.01.t
ATGTTGTCCCATGATTTTTTTGGAACAGTGTCAGCCAAGAAATCAAAAGCAGCCAAAGAA
TCCACTGTTGATTTAACAGAAAGCATCAATGTAAAAGTTGAAAATCCATGTTTAACAAAA
ACAAGCAAGACTACTGGACTAGAGCCTACTACCCCCAGCAATGATTATATTTTAGGCAGT
GAAAATAACCTTAAATCCACCAGTGACAGCCATACACCAAACCCAGTACTAAGGCCGCAC
AGTAAAATATCCAAACATCACTTGAAAGTTGATAATGGCGGCAACAAAGATACTGAAGAT
GCAGAAGCCACAGTAATCTGCTCTGAAGAAAAGGATTTCAGTAATGTCATGGCAGAAGAA
AAGAAAACAAATGAAATAAACCCTTGTGCTTCTTCATCCATGGTAACAGATGGTGATGCA
TGTGCTGCCATATCACACCAAACAGTTACAGACACAACAAATACTGTTACTGGGTTTGAG
GCATTTGATGGACTTGATGATGATGATGACTTATTTGGTGAAGCCTTACAAAAACTAGAT
ACATTGTCTGAAATAAATTTAAAAATGCAGAAAGGGCCAAGATTAAGGCAAGATTTGAAC
CTGGAGCCTGGTGATGTTGTCAATGTTGTTCAAGATGAGAAAGAAACTGCATTGCCAGAA
AATGTAATAAACATAACTACAAAGAAAAATTTGCTTGTTCACCATCCTAATGTGTTAATC
AGTGGAACAACTGTTTCTAATGCACTTGGCTGTTTACGGAGAGCTGTATTGTCTGAAAGA
TTTAAGAATACTGAAAGAGCAACTGATGATTCAAAGATCAGTCCAGTGATGTTTGTTGGA
ACTGTTGTACATTCTTTGTTTCAATCAGCAATTGCTTACAATGGTAAACTCAATGCTGAG
GAACTACTGGAAATGACTAAAGAAACTGTACATGATCCACGTTACATGGCAGACATCATA
ACATTAAACACAACACATGAAGAGATAGTTTCTTTGGTGCAACCATACATCTCATACATC
ATTAAATGGATTGATCAATATTCAAGTATAGTGGTTCCAGCCAACAGTGGTCAAATTCAA
TTCTGTTTGCCTCCAAATGTTTGGGAATCACAACCTTCAGGAAAAAGACAAATGACCCAC
AAGTTTAAGGCCAAGATAGCAATGAATGAGATCAAGGATATTGAGGAAAATGTATGGTCA
CCACGGTATGGATTGAAGGGAAAAATTGATGTCACAGGAGAATTTGCAATTAGGGAAATA
GGTGGAAAGATCCAGAAAAAATCTATAATCCCTCTTGAGCTCAAAACAGGAAAAGATAGC
CACTCGATGGAGCACCACCTTCAAGTGGCTGACTTCTTAAGAAAAACGGTCAAGAAATCA
ATAGAAAATGGTGGCACAACTGAGAGTTTTATCACTAAACCATTGCCAGAGACAATCGAT
AACCTTCGAAGTTGCAAATGGTGTTCACAACTTCGTAACTGTTCCCTTGTTTATCACTCT
GTTGATAAATCACAGACCAGACACCAACCTGCACCAGAGCTTAATCTTCTGATGACTCAA
TTTGTGTCACATCTTAGCGACAATGACTTTGCATACTTTGAACACTGGATGACTTGCATG
CTGCTCGAAAGTCAAGAAAGCACAAAGAAAAATCAAAAACTTCGCTTCTGGCTCAAAACA
CCTGCAGAAAGATCTTCCGAGGGAACTTGTTTAACAGATCTGAGATTGGCTGGACCACCA
GTAAACATAGATAATAAAAATGTTTATCTGCAGACATTTAAGAGAAACAAAATTTCTGAA
ATCAAGGAGAAATTACCATTCTCACCTGGGGAATCTGTACTCATCAGTGGATTTGAGCCT
GAGTTTATTGCTCTGGCTTCTGGGACGATTATCAAGATTACTGATGAATTTATTACGATT
CACACAACGCGGGACCTAAGCAAATATCCAAGTGATATGAAGTACAGCTTAGATAACCAA
GTGTGGATGAGTCAAATCTCACTGCAGTCATCGCTAAGCAACCTGTCCCTGCTTATGGAC
CTTGATGAACATTACTATCGCCTTAGAAGACTTATTATTGGCCATGAGGAACCGACATTT
GGAAAGAACTTGGATTTTATTCCTCGCTCAGCAAAAGAGGAAGTTGCCTCAATGTTACGT
GGGCTAAACCGAACTCAACGTCAAGCTATTAAACGAGTTCTGCTATCAAATGAGTACACC
CTTGTGGTTGGTATGCCCGGAAGTGGAAAAACAACCACAATTGTTGCTATGATTCGAATC
CTGCTGTTATGTGGTCTTCGAGTTTTAGTTTCATCTTACACTCACTCAGCTGTTGACAAT
CTGCTTATAAAGCTTGTCAAGTACAAGGTGGACTTTTTGCGACTTGGACAATCTTCTTCT
ATTCATCCCACTGTTCTTCCATTTTCGGAACAAGCATCTGAATGCAAAGAACCTGAACAA
CTTAAAAAATTGTATCACGATGCGAGAGTGGTTGGTTGTACTTGTCTTGCAATCTATTCG
CACGCATTCTTCCAAATTCCTGGCCAACCGAATCCCTTGTTTGATGTTTGCATCGTTGAT
GAAGCGTCTCAGATCGCGCAGCCCGCTTGTCTGTCGCCTCTCTTGCACTCCAAGCGGTTT
GTGCTGGTCGGATACCACAAGCAACTTCCACCGCTAGTGGTCAGCAGTGAGGCAAGACAA
ATGGGTGCAGACGAAAGCTTGTTCCGTCGGTTAACCATCCACAAACCTGCACTTTGTGAA
CTTACTCTACAGTACAGAATGAACAGCGACATCATGGCTCTCAGTAATCATGTGACATAT
GAGGGCCGGCTTGAATGTGCTCACGAAAGCGTTGCCACAGCAACCGTGAAACTCGACAAT
ATCGATGCAGTAAAAACGGAGCTTAAAGACGAAAGTGAAAATAGTTGGTTAATTCGAACT
TTGGATGTCAAAACTTCGGTTCTGTTTCTTGACACAAGCAAATGTGGTTGTCGTGGGTCC
CAAATTGGTATTATTGCTCCATTCCGAAAACAACTGCAAGCGATTGAAGAAGAAGTTCAA
AAAATTGCTGCTGATGACGTGGGTGATATTGAGATCAACACTGTGGACAAATATCAAGGA
CGAGATAAAAGTGTGATTTTGTTGTCGTTTGTCCGTTCCAAGAAAGATGAACTTGGTGAA
AAAAAGGGGGAATTGCTCAATGATTGGAGAAGGCTCAATGTCGCCCTCACGCGAGCAAAA
CACAAGTTAATAATGGTTGGATGCATAAGAAGTTTAAATGAATACGAACCGTGCAAAAAA
ATGATCGAGTATCTCCAAACTAATCAACTAATACTCAATCTGTAG

InterProScan

PANTHER
Dna2 (IPR026851) - T[68-1107] 1.1E-172
Pfam
DNA_replication_fac_Dna2_N (IPR014808) - T[198-413] 5.3E-44
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[717-1092] 2.2E-54

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RENT1_HUMAN 28.097 % 142 3.55E-34
SMBP2_HUMAN 27.07 % 149 1.7E-36
DNA2_HUMAN 38.454 % 625 0