- Transcript 'Moocci.CG.ELv1_2.S25...' >
- Transcript 'KH2012:KH.C11.151.v3...' >
- Transcript 'Phmamm.CG.MTP2014.S6...' >
- Transcript 'Phmamm.CG.MTP2014.S9...' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S150.g04253.01.t
Possible name(s)
HDGFL2; HDGFL3; PSIP1
Gene model
Location
S150 [171,393 / 172,776]
Amino acid sequence
Length: 460
>Phmamm.CG.MTP2014.S150.g04253.01.p
MKGYPHWPARIDDLPEGAVKPPSKKYPIFFFGTHETGFLAATEIYPYEEYKKKFGQPRQR
PFYNAGLWEIENDPTVMFRGRGSNLEEQGEEAGSDAISDEEPQNQKSINDPPAPVSESDS
SPAEEDYDEESSPEVDTSDDDDFTVKKDGAKASGGSKSAKSSSENDSSHEVEQPPKKKRK
KSVQESQKSNEKKPRTQKKKQDSKPMSDSSDLSSSDSETEDVVSSWKRKDAERKEKQKLE
AEKRLEEETKKMKAIEKEVDRQQKDISQQQTKNEKKKSKSDSTKHKERKKSKDDRKRKSE
VKPEHKPKKKETKKVTKIRQMEIESDDESPKIATKQSKSRKPSAEKATTGPNLLPQQELE
MYEKVLKSALTVENPDIDKALSVLDLIEQVQITADLLKKCQSLVTTVKKIRRYRASQKIM
DKSDKVYNRFKIIFTGLENGAAVTAAAVTKTVKEKEPSDT
Nucleotide sequence
Length: 1,383
>Phmamm.CG.MTP2014.S150.g04253.01.t
ATGAAGGGTTACCCACATTGGCCTGCTCGCATTGATGATCTTCCGGAAGGTGCCGTGAAA
CCTCCATCCAAAAAATACCCAATTTTCTTTTTTGGTACTCACGAAACTGGATTTTTGGCA
GCAACTGAAATCTACCCTTATGAGGAATACAAAAAAAAGTTTGGCCAGCCTCGTCAAAGA
CCTTTTTACAATGCAGGATTATGGGAAATTGAAAATGATCCAACAGTGATGTTCAGAGGC
CGAGGATCTAATTTAGAAGAGCAAGGGGAGGAGGCTGGTAGTGATGCTATATCAGATGAA
GAGCCACAAAATCAGAAGTCAATAAATGACCCACCTGCCCCAGTTTCTGAGTCTGACAGC
AGCCCTGCTGAAGAAGACTATGATGAAGAAAGTTCACCTGAAGTGGATACAAGTGATGAT
GATGACTTTACAGTAAAAAAAGATGGCGCAAAGGCATCTGGTGGTAGTAAAAGTGCAAAG
AGTTCTTCAGAAAATGATTCTTCTCATGAAGTTGAACAACCACCGAAGAAAAAGAGAAAA
AAGTCTGTGCAAGAATCGCAGAAATCCAATGAAAAAAAACCACGAACACAGAAAAAGAAG
CAAGATTCAAAGCCAATGTCTGACTCAAGTGACTTAAGCAGTTCTGATAGTGAGACAGAA
GATGTTGTATCATCATGGAAACGAAAAGATGCAGAGAGAAAAGAAAAGCAAAAATTAGAG
GCTGAAAAACGGTTGGAAGAAGAAACAAAAAAGATGAAAGCCATTGAAAAGGAGGTAGAT
CGGCAACAAAAGGACATTTCTCAACAACAAACTAAAAATGAAAAGAAAAAATCAAAGAGT
GATTCCACAAAACACAAGGAAAGAAAGAAATCAAAAGATGACCGCAAACGAAAATCTGAA
GTTAAACCTGAACACAAGCCCAAAAAAAAGGAGACCAAAAAAGTGACGAAAATCAGGCAA
ATGGAAATAGAAAGTGACGACGAAAGCCCTAAAATTGCTACCAAACAAAGTAAGTCACGT
AAACCTTCAGCTGAAAAAGCAACTACAGGGCCTAATTTACTGCCACAACAGGAGCTGGAA
ATGTATGAAAAAGTTTTGAAATCTGCATTGACTGTTGAAAATCCCGACATTGATAAAGCT
CTCTCAGTACTAGACCTTATCGAACAGGTTCAAATCACTGCAGACCTTTTGAAGAAATGC
CAATCATTAGTTACAACAGTAAAAAAGATTCGCAGATACAGAGCCAGTCAAAAAATCATG
GATAAATCTGACAAGGTGTACAACAGGTTTAAGATTATTTTCACTGGTTTGGAAAATGGT
GCTGCAGTTACAGCGGCTGCTGTCACAAAAACTGTCAAGGAAAAAGAACCATCGGATACC
TGA
| SMART |
PWWP_dom (IPR000313) - T[1-48] 0.0024 |
| Pfam |
PWWP_dom (IPR000313) - T[1-54] 1.5E-6 |
| ProSiteProfiles |
PWWP_dom (IPR000313) - T[1-50] 10.112 |
| Gene3D |
TFIIS/LEDGF_dom_sf (IPR035441) - T[356-448] 2.6E-24 |
| SUPERFAMILY |
HIVI-bd_sf (IPR036218) - T[357-431] 1.83E-19 |
| Pfam |
LEDGF_IBD (IPR021567) - T[358-455] 2.3E-19 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HDGR3_HUMAN | 60.748 % | 139 | 7.53E-39 |
| PSIP1_HUMAN | 48.462 % | 136 | 6.54E-35 |
| HDGR2_HUMAN | 61.538 % | 129 | 3.85E-32 |