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TRANSCRIPT CARD

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  1. Clone 'cijv047h08' > 
  2. Clone 'ma171b19' > 
  3. Clone 'cima005g02' > 
  4. Clone 'cien47836' > 
  5. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S156.g04362.02.t

Possible name(s)

SDHB

Gene model

Phmamm.CG.MTP2014.S156.g04362

Location

S156 [32,013 / 37,417]

Sequences

Amino acid sequence

Length: 282

>Phmamm.CG.MTP2014.S156.g04362.02.p
GFGISRTVLRKSCQTACLYTQTARCAASAAAVEKEQPRLKTFSVYRWNPEEKGSQPYMKK
YKVDLNDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNIKGTNTLACLSRIDTN
LSKPTKIYPLPHMYVVKDLVPDMANFYAQYRSIEPFLKQKDVSKAGVENHQSVEDRQKLD
GLYECILCACCSTSCPSYWWNPTKYLGPAVLMQAYRWIIDSRDEYTAERLDRLNDPFSLY
RCHTIMNCTKTCPKGLNPGLAIAELKKMLATHNSSAVAISQK

Nucleotide sequence

Length: 946

>Phmamm.CG.MTP2014.S156.g04362.02.t
CTGGGTTTGGGATTTCTCGTACAGTGCTGCGAAAATCATGCCAAACAGCCTGTCTTTACA
CTCAAACTGCAAGATGTGCTGCCTCAGCAGCTGCTGTCGAAAAAGAGCAACCAAGATTGA
AAACATTTTCTGTCTATCGCTGGAATCCAGAGGAGAAGGGTTCACAACCATATATGAAGA
AATATAAAGTTGATTTAAATGATTGTGGTCCCATGGTGCTTGATGCTTTAATTAAGATCA
AGAATGAACAAGATCCAACGTTGACATTTCGACGTTCATGTCGTGAAGGCATTTGCGGAT
CGTGTGCAATGAATATCAAAGGAACAAACACCTTAGCTTGCTTATCACGAATTGATACAA
ACTTGAGCAAACCGACAAAGATATATCCACTCCCTCACATGTATGTGGTTAAGGATCTTG
TCCCTGACATGGCAAATTTCTATGCTCAGTATCGTTCAATCGAACCATTTTTGAAGCAGA
AAGATGTTTCCAAAGCGGGTGTTGAAAACCATCAGTCAGTGGAAGACAGGCAAAAGTTGG
ATGGTCTGTATGAATGCATTTTGTGTGCTTGTTGTTCCACATCTTGTCCAAGTTACTGGT
GGAATCCAACAAAATATCTCGGTCCCGCTGTTTTGATGCAGGCATACAGATGGATTATTG
ACAGTCGTGACGAATACACAGCAGAAAGATTAGATCGTCTTAATGACCCATTCTCGTTAT
ACAGATGTCATACAATCATGAACTGCACCAAAACCTGTCCAAAGGGGCTCAATCCAGGTT
TGGCTATTGCGGAGTTAAAGAAAATGCTGGCAACTCACAATTCATCAGCTGTAGCAATCT
CCCAGAAATAATTTGTTGTTTTTGTGCAGATGTGTTGGCCTTGTAAAAATGTAACCCACT
TTTTGGTTGTCTGTATTTGTGTGAGGAGAAATAAATTATATCAGAC

InterProScan

Gene3D
Beta-grasp_dom_sf (IPR012675) - T[28-142] 1.8E-49
SUPERFAMILY
2Fe-2S_ferredoxin-like_sf (IPR036010) - T[38-142] 3.19E-29
ProSiteProfiles
2Fe-2S_ferredoxin-type (IPR001041) - T[40-133] 9.142
Pfam
Succ_DH/fum_Rdtase_N (IPR025192) - T[41-147] 8.3E-33
TIGRFAM
Succ_DH/fum_Rdtase_Fe-S (IPR004489) - T[44-266] 8.9E-84
CDD
2Fe-2S_ferredoxin-type (IPR001041) - T[72-121] 0.00350256
ProSitePatterns
2Fe2S_fd_BS (IPR006058) - T[93-101] .
Gene3D
Helical_ferredxn (IPR009051) - T[143-278] 4.8E-61
SUPERFAMILY
Helical_ferredxn (IPR009051) - T[144-271] 1.26E-36
ProSiteProfiles
4Fe4S_Fe-S-bd (IPR017896) - T[175-205] 7.634
ProSitePatterns
4Fe4S_Fe_S_CS (IPR017900) - T[185-196] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SDHB_HUMAN 72.075 % 412 5.47E-147