- Transcript 'Phmamm.CG.MTP2014.S4...' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S159.g04442.02.t
Possible name(s)
COL4A1; COL4A2; COL4A6
Gene model
Location
S159 [96,435 / 107,925]
Amino acid sequence
Length: 1,751
>Phmamm.CG.MTP2014.S159.g04442.02.p
MRNVARRGHAKLSQLTTVLICCSFNGKKSKGPCGGRDCSDLGPCAFCISEKGRRGPTGVP
GFSGINGVPGHPGDQGPRGFPGENGCNGTKGDLGEEGPPGLDGLDGEDGEFGSKGLKGEP
AIIKDENMIKGEPGNEGPAGPVGFQGPPGRRGPIGPRGFDGPPGPPGNPGPKGLKGEDGL
EGIGFQGKKGTKGESGLPGTPGGPGFVSGKEPTEIFPIPGPPGNDGQKGRKGERGMTGDV
GFPGPTGFKGMSGGKGEKGVRGLAGPRGRPGIPGVSGYNGDKGERGEDGQKGTAGVQGMK
GERGMQGPEGPLGQPGLMGLQGPLGPPGLPGETGFQGESGSPGESGIEGLPGDKGEDGLQ
GPPGLPGSPGLPGVGEKGKAGAKGLPGANGQDGPIGLPGLAGRKGERGPPGETIPGTNGR
DGTPGPDGEPGKVGSRGPPGEPGRIISPSMDGPMIGPPGPAGLRGPVGEAGLKGVKGVYG
YPGPKGDKGGECDCQDAVGEKGERGPGGQNGLDGLSGLPGLPGQRGDQGEPGEFGQKGEV
GFAGPRGKLGPIGAKGMKGEPVTVKGEIFTEKGEPGLPGGQGPPGEMGLQGRDGPNGRNG
VKGEKGEVGPTGLPGIEGIKGFDGAQGPDGLPGRDGFGFPGRIGDKGEKGDVGSTGLQGY
KGAKGKYIGILGSPGEIIVNESPKGEKGSNGGRGSRGRQGLKGEKGTRGPDGIFGQNGEN
GAPGETGPPGPPGLPGEKGLTGPRGNKGEVGVPGPLGERGLTGRDGFDGFNGEKGERGMS
LQGLPGKKGEKGNPGAVGPIGEPGIIGLTGPEGIPGPQGLPGLDGEPGLPGIQGLEGLQG
EKGESALIGRQGPXDGEPGLPGIQGLEGLQGEKGESALIGRQGPPGEAGPPGYEGRQGPR
GEKGAIGPPGPAASGILKGVKGAMGLPGIQGQPGLPGREGPAGTNGRDGQDGLDGVTGPK
GSKGPPGSQGSPGEPGNDGIDGTAGLRGLDGMNGNAGSKGERGPRGFEGLKGAKGAKGTM
GPADIQALRGYPGAQGDRGEPGLDGINGNPGPAGATGETGEPGAPGPSGEPGIPGENGRN
GFSGRKGEKGQRGERGAVGFPGVFGNKGQKGYSGSDGARGLPGPKGSKGEVGEPGSKGRD
GYPGLNGEDGKPGRQGLPGREGTPGMDGLHGTQGLKGERGYVGQPGLMGVQGFPGNKGSP
GPPGFDGLPGDFGAPGFKGAKGEKGTTGLPGPNGFDGLNGETGPKGYPGKSTVPGPKGTR
GPRGFKGEVGEEGIQGRDGPQGLQGFTGQSGVQGVPGPRGAPGGIGQPGFPGVKGSRGDT
GIDGFPGDQGRPGLQGQPGQIGRRGQKGTKGMSGEQGLNGIDGLPGPVGEDGIPGRIGIP
GTKGSKGNKGVQGFVGSVGEKGVIGFPGASGLPGHPGPTGERGAQGPPGVSIQPSQLIPG
DKGETGLQGLQGFPGSKGRPGLPGPRGFKGESGERGLDGRDGIPGTHGQRGNQGPQGFTG
PKGFPGSDGTPGLQGTAGTAGRVRPPGHIIVKHSQTVDVPECPVGMNKLWDGFSLLYLEG
SEKAHGQDLGQSGSCMRRFSTMPFLYCNNNNVCKYGSRNDKSYWLSTTAPIPMMPVAVDM
VQEHISRCSVCESRSVAMAVHSQDMVVPPCPSGWKGLWFGYSFAMHTAAGAEGSGQSLSS
PGSCLQDFRATPFIECNGARGHCFYYNNQYSFWLSTITPDEQFDTPPMETLKAGNLRMRI
SRCQVCTRINA
Nucleotide sequence
Length: 5,256
>Phmamm.CG.MTP2014.S159.g04442.02.t
ATGAGGAACGTGGCTCGCCGGGGTCACGCAAAATTGTCGCAACTGACCACCGTGCTTATC
TGTTGCTCTTTCAACGGAAAGAAATCAAAGGGACCATGTGGTGGGCGTGATTGCTCCGAT
TTGGGTCCTTGTGCATTCTGCATTTCCGAAAAGGGTCGTCGGGGTCCGACTGGAGTTCCC
GGTTTTTCTGGAATCAATGGCGTTCCTGGACACCCTGGGGATCAAGGTCCTCGTGGATTT
CCTGGAGAAAACGGATGCAACGGAACAAAGGGAGATTTGGGCGAGGAGGGTCCTCCTGGT
TTAGATGGATTGGATGGAGAAGATGGAGAATTCGGCTCCAAAGGTCTAAAAGGAGAGCCA
GCGATCATAAAAGACGAAAATATGATTAAAGGTGAACCTGGAAATGAAGGACCTGCGGGA
CCAGTTGGTTTTCAAGGACCGCCCGGAAGGAGGGGTCCTATCGGTCCCAGAGGTTTTGAT
GGTCCCCCTGGTCCACCGGGCAATCCCGGCCCAAAGGGTCTTAAAGGAGAGGACGGTCTG
GAAGGAATTGGCTTCCAGGGCAAGAAAGGAACGAAAGGAGAATCTGGACTTCCAGGCACC
CCGGGGGGTCCGGGATTTGTGTCTGGTAAGGAACCAACCGAGATCTTTCCTATCCCAGGG
CCTCCTGGAAATGATGGACAAAAAGGACGAAAAGGTGAACGTGGAATGACTGGAGACGTC
GGATTTCCGGGACCAACGGGTTTCAAAGGAATGAGCGGCGGAAAGGGAGAAAAGGGTGTG
AGAGGTTTAGCTGGACCTCGGGGCAGACCCGGTATACCTGGCGTATCTGGCTACAACGGA
GACAAAGGAGAACGAGGTGAAGATGGTCAGAAGGGAACGGCCGGTGTGCAAGGAATGAAG
GGGGAACGTGGGATGCAAGGACCAGAAGGACCGTTGGGACAACCTGGTTTAATGGGTCTG
CAAGGACCACTTGGACCTCCCGGTTTACCCGGGGAAACTGGTTTCCAGGGAGAATCTGGC
TCCCCTGGAGAGTCTGGTATTGAAGGTTTGCCTGGTGACAAAGGTGAAGACGGACTACAG
GGACCACCTGGGCTGCCTGGCAGTCCAGGTCTACCTGGGGTTGGTGAAAAGGGCAAAGCT
GGTGCAAAAGGATTGCCTGGTGCCAATGGACAAGACGGACCAATAGGACTACCTGGTCTT
GCTGGGCGTAAAGGAGAAAGGGGACCTCCGGGAGAAACCATTCCTGGCACAAACGGACGC
GACGGCACACCTGGTCCTGACGGCGAACCAGGGAAAGTTGGTAGTCGAGGTCCGCCCGGA
GAACCAGGAAGAATTATTTCACCATCAATGGATGGGCCAATGATTGGGCCACCTGGGCCA
GCTGGTCTGAGAGGGCCTGTGGGCGAAGCTGGTTTGAAAGGTGTGAAAGGCGTGTATGGA
TACCCTGGACCTAAAGGAGACAAGGGTGGCGAATGTGACTGCCAAGATGCCGTCGGAGAG
AAGGGAGAGCGTGGTCCAGGCGGTCAGAATGGATTGGATGGCTTATCAGGATTGCCTGGA
CTTCCAGGTCAACGCGGCGACCAGGGTGAACCTGGAGAGTTTGGACAAAAGGGAGAAGTT
GGATTTGCCGGACCACGAGGAAAACTCGGACCAATTGGGGCGAAAGGCATGAAGGGTGAA
CCAGTTACTGTTAAAGGTGAAATCTTTACAGAAAAGGGTGAACCTGGCTTGCCTGGTGGA
CAAGGTCCTCCAGGCGAAATGGGTTTACAAGGAAGAGATGGGCCTAATGGCCGTAATGGT
GTCAAGGGAGAAAAGGGTGAAGTGGGACCAACTGGCTTACCGGGAATTGAAGGCATAAAA
GGATTTGATGGCGCTCAAGGACCGGATGGACTTCCCGGCAGAGATGGGTTTGGGTTTCCT
GGTCGTATTGGCGATAAAGGAGAGAAGGGAGATGTTGGATCAACAGGGCTGCAGGGTTAC
AAGGGAGCAAAAGGCAAGTACATTGGCATTTTAGGATCACCGGGTGAGATAATAGTCAAC
GAATCACCGAAAGGCGAGAAAGGAAGCAATGGAGGAAGAGGTTCGCGTGGCAGACAGGGA
CTTAAGGGGGAAAAGGGTACGAGGGGGCCGGATGGAATATTTGGACAAAATGGCGAAAAT
GGTGCACCTGGTGAAACTGGTCCACCAGGACCACCAGGTCTTCCAGGAGAAAAAGGTTTA
ACCGGCCCCCGCGGTAACAAGGGTGAAGTTGGAGTTCCGGGTCCCTTAGGAGAACGTGGT
CTTACGGGACGAGACGGATTTGATGGTTTTAACGGTGAAAAAGGGGAGCGCGGCATGTCA
CTCCAAGGTCTACCAGGGAAAAAAGGCGAAAAAGGAAACCCAGGGGCGGTTGGCCCCATT
GGAGAACCAGGAATCATAGGATTAACTGGTCCAGAGGGAATTCCGGGACCTCAAGGTCTC
CCTGGATTGGATGGAGAACCTGGACTACCTGGAATACAGGGTCTTGAAGGGTTGCAAGGC
GAAAAGGGAGAGTCAGCTCTTATTGGTCGACAAGGTCCTNTGGATGGAGAACCTGGACTA
CCTGGAATACAGGGTCTTGAAGGGTTGCAAGGCGAAAAGGGAGAGTCAGCTCTTATTGGT
CGACAAGGTCCTCCCGGGGAAGCAGGCCCCCCGGGCTACGAGGGTCGTCAAGGGCCCAGA
GGCGAAAAAGGTGCAATCGGTCCACCTGGACCAGCAGCAAGCGGAATTTTGAAGGGCGTC
AAAGGTGCCATGGGTCTACCTGGAATTCAAGGTCAGCCCGGTTTACCGGGTCGGGAAGGT
CCAGCCGGAACCAACGGGCGTGATGGCCAAGATGGTCTAGATGGAGTTACAGGTCCTAAA
GGCTCAAAAGGGCCACCAGGATCACAAGGATCTCCTGGTGAACCAGGAAACGATGGTATT
GATGGCACAGCTGGATTAAGAGGTTTGGATGGAATGAATGGTAATGCGGGTTCCAAAGGA
GAAAGGGGACCACGAGGGTTCGAAGGATTAAAAGGTGCTAAGGGGGCAAAGGGCACGATG
GGTCCAGCTGATATTCAAGCTTTACGAGGATATCCTGGGGCACAAGGAGACCGCGGAGAG
CCAGGGCTAGATGGAATAAACGGAAATCCTGGACCTGCTGGTGCTACAGGCGAAACTGGT
GAACCTGGTGCTCCTGGGCCTTCTGGTGAACCCGGAATACCCGGAGAAAACGGCCGAAAT
GGATTCTCTGGTAGAAAGGGCGAGAAAGGACAAAGAGGGGAAAGAGGTGCTGTCGGATTC
CCAGGTGTTTTCGGCAATAAAGGACAAAAAGGTTATTCAGGCTCTGATGGAGCAAGAGGT
TTGCCTGGACCAAAGGGCTCCAAAGGCGAAGTTGGAGAACCAGGATCAAAAGGCCGGGAC
GGTTATCCGGGATTAAACGGAGAGGACGGAAAACCGGGAAGACAAGGTTTGCCCGGAAGA
GAAGGAACGCCTGGAATGGATGGACTTCATGGAACACAGGGTTTAAAAGGAGAAAGAGGA
TACGTTGGCCAGCCCGGACTTATGGGTGTGCAAGGTTTCCCAGGAAATAAAGGCTCTCCG
GGTCCACCCGGTTTTGATGGTTTGCCGGGAGACTTTGGGGCACCTGGATTTAAAGGAGCG
AAAGGAGAGAAAGGAACAACTGGATTACCTGGACCAAATGGATTTGACGGCTTAAACGGA
GAAACTGGTCCGAAAGGATATCCGGGAAAATCAACAGTTCCAGGACCAAAGGGAACACGT
GGTCCACGAGGATTTAAAGGTGAAGTCGGAGAAGAAGGAATTCAAGGTAGAGATGGACCA
CAAGGATTACAAGGTTTTACAGGACAGTCAGGTGTACAAGGAGTGCCCGGTCCTAGAGGT
GCACCAGGAGGTATTGGCCAACCAGGATTTCCAGGTGTCAAAGGTAGTCGCGGAGATACG
GGAATAGATGGTTTTCCAGGAGATCAAGGTCGTCCTGGTTTACAAGGACAGCCAGGTCAG
ATCGGACGCAGGGGTCAAAAGGGCACCAAGGGAATGTCCGGCGAACAGGGTCTCAACGGT
ATTGATGGGCTTCCCGGTCCTGTGGGAGAAGACGGAATTCCGGGCCGAATCGGAATCCCA
GGGACAAAAGGAAGCAAAGGAAACAAAGGTGTTCAAGGATTTGTTGGATCAGTTGGTGAA
AAGGGCGTCATAGGCTTTCCTGGTGCTTCTGGTCTACCTGGTCACCCAGGTCCAACAGGT
GAACGTGGTGCACAGGGACCTCCAGGTGTATCCATACAACCGAGTCAATTGATACCGGGA
GACAAAGGAGAAACGGGGCTTCAGGGACTCCAGGGTTTCCCTGGTTCAAAAGGACGACCA
GGTCTTCCAGGTCCGAGAGGTTTTAAGGGAGAGTCTGGTGAAAGAGGTTTGGATGGAAGA
GATGGAATTCCTGGAACGCACGGGCAAAGAGGAAACCAAGGGCCTCAGGGCTTCACTGGT
CCAAAGGGTTTTCCTGGAAGTGATGGAACACCAGGACTGCAGGGTACAGCAGGAACAGCT
GGGCGAGTAAGGCCACCAGGTCACATTATAGTTAAACACAGCCAAACTGTCGATGTGCCG
GAATGTCCTGTTGGCATGAACAAGTTATGGGACGGTTTCAGTTTACTCTACCTTGAAGGC
AGCGAGAAGGCACATGGACAGGATTTAGGTCAATCGGGTTCCTGTATGCGTCGCTTTAGT
ACGATGCCGTTCTTGTATTGCAACAATAACAACGTGTGCAAGTATGGAAGCCGAAACGAC
AAATCATATTGGTTGTCAACCACAGCACCAATTCCTATGATGCCCGTGGCTGTGGACATG
GTTCAAGAACACATTAGCCGATGTTCAGTGTGTGAATCTCGATCGGTTGCCATGGCTGTG
CACAGCCAAGACATGGTCGTGCCTCCATGCCCATCTGGTTGGAAGGGACTGTGGTTTGGA
TACAGTTTTGCTATGCACACCGCTGCTGGCGCAGAAGGAAGTGGCCAATCGTTGTCAAGT
CCAGGTTCGTGTTTGCAAGATTTCAGAGCAACGCCGTTCATCGAATGTAATGGTGCCAGG
GGACATTGCTTTTACTATAACAATCAGTACAGCTTTTGGCTTTCGACAATAACACCCGAT
GAACAATTCGACACGCCGCCAATGGAGACTTTGAAGGCAGGCAACCTTAGAATGAGGATA
AGCAGATGTCAAGTCTGTACGAGAATAAATGCATAA
| Pfam |
Collagen (IPR008160) - T[51-100] 4.5E-8 - T[62-119] 3.3E-9 - T[130-182] 6.5E-8 - T[219-274] 6.8E-8 - T[270-311] 2.1E-6 - T[313-370] 7.6E-9 - T[572-628] 1.4E-7 - T[685-739] 3.8E-7 - T[855-911] 1.8E-7 - T[919-976] 1.9E-8 - T[964-1022] 3.0E-9 - T[1030-1088] 1.2E-8 - T[1192-1249] 2.6E-8 - T[1375-1429] 4.0E-8 - T[1464-1522] 5.1E-9 |
| Gene3D |
Collagen_IV_NC_sf (IPR036954) - T[1524-1749] 7.2E-109 |
| ProSiteProfiles |
Collagen_IV_NC (IPR001442) - T[1527-1750] 111.089 |
| SMART |
Collagen_IV_NC (IPR001442) - T[1527-1634] 1.1E-59 - T[1635-1749] 3.4E-66 |
| SUPERFAMILY |
CTDL_fold (IPR016187) - T[1529-1635] 2.59E-42 - T[1636-1747] 5.89E-43 |
| Pfam |
Collagen_IV_NC (IPR001442) - T[1529-1632] 6.1E-36 - T[1637-1747] 2.0E-41 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO4A2_HUMAN | 46.418 % | 619 | 0 |
| CO4A1_HUMAN | 39.552 % | 564 | 1.76E-171 |
| CO4A6_HUMAN | 39.264 % | 680 | 0 |