- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S15.g00653.01.t
Possible name(s)
MLH1; PMS1; PMS2
Gene model
Location
S15 [279,022 / 287,993]
Amino acid sequence
Length: 612
>Phmamm.CG.MTP2014.S15.g00653.01.p
MAESKEVVIKRLDETVVNRIAAGEVAIKSGGLKMIQISDNGHGIRKEDLEIVCERFTTSK
LKEFTDLRSITTFGFRGEALASISHVAHLCISSKTQGSQCGYKASYVDGKLKDQPRPTAS
NDGTQITVEDLFYNVLTRRKAFRSASEEHQRIADVITRYAIHNSGKSFTLRKSDNDTSSG
VTVRTQLGASTLDNIRSLFGSNIANEVIHVEHENETLHLRSYLPKGGRPFVYLSLEMPAT
NLDVNVHPTKHEKLLPTASILTKESSEKEAAKQQSERIYDHNLVRTDSKLQKLDAFLVKT
PKEKEKPHDSTSLTDKPHVEPQTSTSSSNNLTAAELPRKRKIQLTSVLQLQEEVRKRSSK
DLTDILHDHTFVGCVDPELALIQHKTKLYLANTTKLTREMFYQIVLEDFGNFGMLRLSEP
APIRDLAMLGLEMKESGWTPEDGSKEDLADYIVKFLSEKSEMLKDYFRLEIKDCDVTAIP
MLLQNYIPPLEGLPMLVLRLATEVCWDSEKDCFESFAREIARFYAVRKGYTDLEEIIKQR
DAQVAMEIGDGGNLDDEGTESRSNPSPWKRTVEHVIYRAMRSHVKPDERKAKDGTFLQLA
NLPDLYKVFERC
Nucleotide sequence
Length: 1,839
>Phmamm.CG.MTP2014.S15.g00653.01.t
ATGGCCGAAAGTAAAGAAGTGGTGATTAAGCGACTCGATGAAACTGTGGTGAACAGAATC
GCAGCTGGGGAAGTTGCCATTAAGTCAGGAGGTTTAAAGATGATCCAGATTTCGGATAAT
GGTCACGGAATAAGAAAAGAAGACCTGGAAATAGTTTGTGAAAGGTTCACAACCAGTAAA
CTGAAGGAATTCACTGACCTGAGATCAATAACAACTTTTGGTTTCCGTGGTGAAGCATTG
GCCAGCATAAGTCATGTGGCACATCTATGCATTTCCAGTAAAACTCAAGGCAGCCAGTGT
GGATACAAAGCAAGTTATGTTGATGGTAAACTGAAAGACCAACCAAGACCAACTGCTAGC
AATGATGGAACACAAATAACTGTGGAAGATTTGTTTTACAATGTGTTAACCAGAAGAAAA
GCTTTCCGCAGTGCTTCTGAAGAACACCAAAGAATTGCTGATGTCATAACAAGATATGCC
ATTCACAACTCCGGAAAATCGTTCACACTACGCAAGAGCGACAACGACACTTCTAGTGGT
GTGACAGTTCGGACACAACTTGGTGCCTCAACACTGGATAATATTAGATCCTTGTTTGGT
TCCAACATTGCGAATGAAGTCATCCACGTTGAACATGAAAATGAAACACTACATTTGAGG
TCATATCTTCCAAAAGGAGGTCGTCCATTTGTGTATTTAAGTCTTGAAATGCCGGCAACC
AACCTCGATGTCAACGTTCATCCCACGAAGCATGAGAAACTGCTGCCCACTGCCAGTATT
CTGACTAAGGAATCTTCTGAGAAGGAAGCAGCAAAACAGCAGAGTGAGAGAATTTATGAC
CACAACCTGGTACGAACCGACAGTAAACTGCAGAAACTCGATGCTTTTTTGGTTAAAACT
CCAAAAGAAAAAGAAAAACCTCATGACAGTACAAGTTTAACTGATAAGCCACATGTTGAA
CCCCAAACTTCCACATCATCCAGTAACAACCTTACAGCAGCTGAGTTGCCACGTAAGCGG
AAAATCCAATTGACAAGTGTTCTGCAGCTTCAGGAGGAAGTAAGGAAAAGATCAAGCAAA
GATTTGACTGACATATTACACGATCACACATTCGTTGGCTGTGTTGACCCCGAGCTGGCA
CTGATCCAACACAAAACTAAACTCTACCTCGCTAATACGACCAAACTGACAAGAGAGATG
TTCTACCAAATTGTTCTCGAAGATTTTGGAAATTTTGGCATGCTTCGACTTTCCGAACCG
GCCCCAATCCGCGACTTAGCAATGCTTGGACTTGAAATGAAAGAATCTGGCTGGACGCCA
GAAGATGGCAGTAAAGAGGACCTTGCTGATTACATCGTAAAGTTTTTGTCCGAAAAATCT
GAAATGTTGAAAGACTATTTTCGCCTGGAAATTAAGGACTGTGACGTCACTGCCATACCG
ATGTTGCTCCAAAACTACATCCCACCACTAGAGGGACTACCGATGCTCGTGTTGCGTCTC
GCCACCGAGGTTTGCTGGGACTCGGAAAAGGACTGCTTCGAGTCTTTTGCGCGCGAAATA
GCCAGATTTTACGCCGTCCGTAAAGGCTACACAGACCTGGAAGAAATAATCAAACAAAGA
GACGCGCAAGTTGCCATGGAAATCGGCGACGGCGGTAACCTTGACGACGAAGGCACCGAA
AGCAGAAGCAACCCGTCGCCATGGAAACGGACGGTGGAACACGTGATCTACCGAGCGATG
CGCAGCCACGTTAAACCGGATGAGCGGAAGGCAAAAGACGGGACTTTCCTGCAACTTGCC
AACCTGCCCGATTTGTACAAAGTATTTGAGCGTTGTTGA
| PANTHER |
DNA_mismatch_repair_MLH1 (IPR011186) - T[8-217] 4.5E-182 - T[220-330] 4.5E-182 - T[301-612] 4.5E-182 |
| CDD |
HATPase_C (IPR003594) - T[22-98] 8.55052E-5 |
| Gene3D |
HATPase_C_sf (IPR036890) - T[24-199] 7.3E-54 |
| SUPERFAMILY |
HATPase_C_sf (IPR036890) - T[24-179] 4.19E-36 |
| ProSitePatterns |
DNA_mismatch_repair_CS (IPR014762) - T[74-80] . |
| SUPERFAMILY |
Ribosomal_S5_D2-typ_fold (IPR020568) - T[183-253] 5.69E-8 |
| SMART |
DNA_mismatch_repair_C (IPR013507) - T[195-264] 0.0031 |
| Gene3D |
Ribosomal_S5_D2-typ_fold_subgr (IPR014721) - T[201-281] 3.1E-10 |
| Pfam |
DNA_mismatch_repair_C (IPR013507) - T[220-252] 7.0E-8 |
| Pfam |
Mlh1_C (IPR032189) - T[343-612] 6.8E-91 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PMS2_HUMAN | 31.313 % | 92.4 | 2.01E-19 |
| PMS1_HUMAN | 26.022 % | 90.9 | 6.01E-19 |
| MLH1_HUMAN | 42.653 % | 589 | 0 |