- Transcript 'Phmamm.CG.MTP2014.S8...' >
- Transcript 'Moocci.CG.ELv1_2.S40...' >
- Transcript 'KH2012:KH.C8.374.v1....' >
- EST 'AHC0AAA224YB04_RM1' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S160.g04457.01.t
Possible name(s)
C1QTNF9; C1QTNF9B; COL21A1
Gene model
Location
S160 [109,724 / 112,241]
Amino acid sequence
Length: 684
>Phmamm.CG.MTP2014.S160.g04457.01.p
LFCITDCSVMLLNNMYVMAIAIGLILSTAAQGATAQDGNEELVAPQLRFMRPPESNEPQT
VRKLVDTRIRQSTQHEVEVEVHRSEETTTTSEGAECESNCTGSSSCESSSSSACSSTSSC
ATHCNTGCSCGCACGCCGNGGGGASDVTLLLHTLNRLTQGPPGSQGPPGLQGPAGFPGMP
GPPGKAGHPGIQGPPGLQGIPGPPGFGLKGDCGPRGPKGEPGTSEVGKPGPPGPPGPTGK
IDYEEFRNSPITVTGVEGPQGEKGMQGEKGMTGPPGLRGPPGFSSSDIETSKVTREVAGP
RGPKGEAGIGIVGPPGRPGQDGIDGIPGESIKGDQGPAGEPGIGLPGPPGPQGPPGRAVE
GKKGESGQDGQPGNPGTPGLPGPPGPPGIPKRQTDSDGLLNGESGTQGEVGEPGPTGPQG
PPGMKGSRGMKGEKGMTGQQGRHGRPGSQGRSGRGEKGIKGDMGLPGPSIKGEPGPPGPP
GRSTHSRTNTGMSSGSTLCCHQEKVAFMAGLSRNFQGNNRGICFDHVITNQGGAYRSATG
CFIVPAAGIYVFHVHILRCRSSGPLYVHLMRNGEMISSATNQDSRFETTSATAVMQLRRG
DVVWVRLRQGVAYGHSPSHYTTFSGYSIQLDEAVDVTAAFAQQRYKTGTSYALYKGATSN
LLTEEAAARARSMSGTMMSMTGND
Nucleotide sequence
Length: 2,517
>Phmamm.CG.MTP2014.S160.g04457.01.t
TTTTGTTTTGCATTACAGATTGCAGTGTAATGTTATTAAACAACATGTATGTTATGGCAA
TTGCCATTGGGTTAATATTGTCTACAGCGGCTCAAGGCGCCACAGCACAAGATGGAAATG
AAGAGCTAGTTGCGCCACAACTTCGATTTATGCGTCCACCAGAAAGCAACGAACCGCAGA
CGGTAAGAAAACTTGTGGACACGAGGATCCGGCAAAGCACTCAACATGAGGTCGAGGTTG
AAGTGCACAGATCGGAAGAAACGACGACTACTTCTGAGGGTGCAGAATGCGAGTCGAACT
GCACAGGGTCGTCTTCATGTGAGAGTTCAAGCTCAAGTGCCTGTTCTTCTACCTCATCCT
GCGCAACACACTGCAACACAGGCTGTAGCTGCGGTTGTGCTTGCGGCTGCTGTGGCAATG
GCGGCGGTGGGGCGTCTGATGTTACTCTATTGCTGCATACGTTAAACCGCTTAACACAGG
GCCCACCCGGCTCGCAAGGACCTCCTGGGCTACAAGGACCGGCAGGATTTCCGGGCATGC
CAGGGCCTCCCGGAAAAGCTGGACATCCCGGAATTCAGGGACCACCTGGTCTGCAAGGTA
TCCCAGGACCCCCTGGATTTGGATTAAAAGGAGATTGTGGACCACGTGGGCCCAAGGGAG
AACCAGGAACGTCTGAAGTAGGCAAACCAGGACCACCAGGCCCGCCAGGACCGACTGGCA
AGATTGACTATGAAGAATTTCGCAATTCTCCGATCACAGTCACAGGCGTGGAAGGCCCAC
AAGGCGAAAAGGGAATGCAAGGCGAGAAAGGCATGACAGGACCTCCAGGACTTAGAGGGC
CACCAGGATTTTCCTCCAGTGACATTGAAACGTCCAAAGTCACGCGTGAAGTTGCGGGCC
CAAGAGGCCCCAAAGGTGAAGCAGGTATTGGAATTGTCGGACCACCAGGTCGCCCTGGAC
AGGACGGAATCGACGGTATACCTGGTGAAAGCATTAAAGGCGACCAAGGACCGGCAGGAG
AACCCGGAATTGGCCTTCCTGGGCCACCTGGACCGCAAGGTCCACCAGGTCGTGCCGTTG
AAGGAAAGAAAGGTGAAAGCGGCCAGGATGGACAACCAGGAAACCCTGGGACACCAGGAT
TGCCAGGACCCCCAGGTCCTCCTGGAATACCGAAACGTCAAACTGACAGCGATGGGTTGC
TGAACGGAGAATCTGGAACACAAGGAGAGGTCGGTGAGCCTGGTCCGACTGGGCCTCAGG
GTCCTCCAGGCATGAAAGGATCACGAGGTATGAAGGGAGAAAAGGGAATGACCGGACAGC
AAGGAAGACACGGACGCCCAGGTAGTCAAGGCAGAAGCGGCCGTGGGGAGAAAGGAATAA
AGGGTGACATGGGGTTGCCTGGACCTTCAATTAAAGGCGAGCCCGGACCGCCAGGTCCAC
CAGGACGCTCAACACATTCACGTACAAACACGGGCATGAGCAGCGGCAGTACGCTGTGTT
GCCACCAGGAAAAGGTCGCATTTATGGCTGGTCTTTCGAGAAACTTCCAGGGAAACAACC
GTGGGATCTGCTTTGATCACGTGATAACAAACCAAGGCGGCGCATACCGTTCCGCCACCG
GTTGCTTTATTGTACCAGCGGCAGGAATCTACGTTTTCCACGTGCATATCTTGCGTTGTA
GAAGCAGCGGGCCACTCTACGTCCACCTGATGCGAAACGGCGAAATGATCAGCTCAGCAA
CCAATCAGGACTCGAGGTTCGAGACGACGTCAGCAACGGCAGTGATGCAGCTGCGGCGAG
GTGACGTAGTTTGGGTGAGACTGCGTCAAGGCGTGGCGTACGGCCACAGTCCTTCACACT
ACACAACTTTCTCGGGCTACTCGATCCAGCTGGATGAGGCTGTGGATGTGACAGCTGCCT
TTGCCCAGCAGCGTTACAAAACTGGAACGAGTTATGCGCTGTACAAAGGTGCTACATCAA
ACTTGTTGACCGAAGAGGCTGCAGCCCGCGCCAGATCTATGAGTGGCACAATGATGTCCA
TGACAGGCAACGATTGAAGTCAATGACGTCAAACACGAAATCTCTTCATCAAGGCGACTT
TATAACTCACGTCATAGCTCCGTTATTGCGTCGTTGATCGACGTTATATGCGAAGTACAA
GTTCAAACGCACACAAAAACTTGCCATTAAAAACCCATTTCTCGTTCGTTTAAGTCACAA
TCATTTGTGTTGCCACAACGCTGTAAGGGTTGCAAGTATAATTTTCATTAACGAGAGTAC
AAATCAATGACAATCGAATCACGGATGTTGCAAAATTCATTTTCACCGTCTTTAGCAATT
GCATTTCAACTTTTCACACTCTAAATATATTTATTTTATTTACGTTGCTATTTGTTCAGT
GTCTTTAAATCACACTTAAAGGTTCATTTTCTCGTTGTTTGTCGTAAAGGTGTTACTACG
TTAAGGTTTTCGCTTTACTTGTTGCGTAAGAGTATAAGACGCAATAAAAAACGCTGA
| Pfam |
Collagen (IPR008160) - T[159-205] 1.8E-7 - T[402-453] 3.2E-8 |
| SMART |
C1q_dom (IPR001073) - T[498-631] 5.5E-19 |
| ProSiteProfiles |
C1q_dom (IPR001073) - T[500-634] 29.343 |
| Gene3D |
Tumour_necrosis_fac-like_dom (IPR008983) - T[501-635] 1.2E-36 |
| SUPERFAMILY |
Tumour_necrosis_fac-like_dom (IPR008983) - T[503-628] 1.29E-28 |
| Pfam |
C1q_dom (IPR001073) - T[506-626] 3.2E-25 |
| PRINTS |
C1q_dom (IPR001073) - T[515-541] 1.1E-10 - T[542-561] 1.1E-10 - T[587-608] 1.1E-10 - T[619-629] 1.1E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| C1T9B_HUMAN | 33.235 % | 115 | 5.77E-28 |
| COLA1_HUMAN | 39.222 % | 123 | 4.89E-29 |
| C1T9A_HUMAN | 33.529 % | 115 | 4.73E-28 |