- Transcript 'KH2012:KH.L22.20.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S5...' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.C9.264.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S161.g04474.01.t
Possible name(s)
SEMA6A; SEMA6C; SEMA6D
Gene model
Location
S161 [33,825 / 48,155]
Amino acid sequence
Length: 924
>Phmamm.CG.MTP2014.S161.g04474.01.p
MAEDEDRVFIFFNEIQILPGGERRTVAQVGQICKRDNGGERVLQRMWTTFIKSRLNCSYN
GFYLNELRDITKPTMANGQAVIYATFVTPENSLPGSAVCSYTLDSIREALQGPFLAQTSS
TPAPSKSHHPGLCPDEKPSDAELLFIKSSPQMANQAKGLLLMTHQGARYTTSVVDSSPSD
KDLKVFYIGDEEGKLIRRLAPSSNWKSGAVLSVQDVFDENRCLSAMPSKEDKKVIKILLD
STSDYVTVAFKHCTVSVPLHSCHLHQCKSTCIGSGDPYCGWNGTSCVAFQETLPPLNQDL
RSAINSPQLFPGCAILTSKSETSTQSLKDIEKEIVFPDETLLPEQQIDDKDKVGPEELGD
PDLEVASFGGNVLAIAVILTFMLTVVIIMATYFFCRCWRGKKKYDFHQKQMMQHQQNLDE
LEKRGSLTRKAQLTYNGCLEWLCGPPKPTPAPTPMINNKSDEHYIPRAKPNNYSEAPTLQ
LHVEKAKKQRRSSSRLNSTSSVNSNNSCIVPKVMRQESVVSMGRRPSSLQPLLINQTYEP
VHITNYDGTIQRQFSEASTLPAQNKRSSHASSSGSGGSPISNESHLGAAETGVLPTASAK
MRRRNERAQNQTNEIMRESDTAIMDFQNALGRMEIMGITNHHQPVNIARQRLDSNDSGKG
ESPRNSLRTDLEQSVASITSRHPRPNSLNLQRSTSCRRQRLLSEPSHSPEAISAFAPPIQ
RFHSVQPQPQMTPNGRHSRSQPTTPVGGPSSHKLVIFQPAQEQSVYATLPKHDVPVTGRR
KQRMSGDNHQQMYIQQRPVSTDVSNQRRSSTASRPNTSPAKVPPNRYPSLQVRGPYATKP
SVAPVVIQQPASRNSPPKNHYPSLPHRSSSAPFGNNNTFERPSTLHRREKMPSFLRQSSM
PGGAPTKPTFYPPPIVPTSGVEAL
Nucleotide sequence
Length: 3,989
>Phmamm.CG.MTP2014.S161.g04474.01.t
ATTTCTTGTTGACATCTAATCCTTGCCGTAACTTGATTAAGTGCTGTCTGTGTGTTTGAT
TTCCTTTGCGACGGATTTATTTTACATGGCGAAGAAACTTCACTAGACCGACAAGCAAAA
GATACAGCTTCTAAATATGGGACGCATTCTCATCATGATACTGCTTATGGCAAAATACGT
CATCCTGACTTCATCATCGTTTCCCGATAATATCCTGCCACTCAGAGAATCAAGCTTGAA
AGACATTTCAAGCAAAGCCTTTTCTGGTGACGATGCTTCCAGCGGACATCGTCTTCGTCA
CATACAGTTGATCAAGAGAATGAAAGTTTTGGGAGAAACAAAGATTGTAATTTGTGCAAG
AGAGGATATTTTCATCATAAACCCTGAGCAATTTTCGTCATCCAATCCGAATGACATCAC
TTATGATTCGGTTGTAACTTGGAAGTCCGAATTGCAAACCCGTGACCTGTGCATAATGAA
AGGCCAACCTGACGAACTCTGTTACAATTACAACAGCGTGTTCGAGGCATTGGACGAGGA
AGGAAACGAGTTTCTGGTTTGTGGAACTGACTCATATAATCCAAACTGCACAAAATATCA
GGCGATTAAATCCAGCGATGGTCGTGTGGAACTGATTAACTTTGGTTCGGGTTATTTTTC
TGGGAAGCAGAGGTGCCCGTTTGGCCCAAACCAGCCCAGCGCAAGTCTTTTTACAGGAGA
GTCTTTGTATTCTGGAACCTTTCAAGCCTTTTCTGGTGGCTCTCCAGTTATCTCCCGCAC
AATGGGAGATATGCCTCCTCTCCGCACCCCCGACGCCGCGGAGACAATCAATGGTAAATA
ATTTATGATGTCATAAACGATTAATGATCTCATAAACGTGTCTGCGACATGGACGAGTCT
ATTAACTGTCACTTTTATGTCAAACAGAACCAAGTTTTGTGGGAATGGCCGAAGATGAAG
ACCGTGTTTTTATCTTTTTTAACGAAATCCAAATACTCCCTGGCGGTGAACGCCGTACAG
TGGCCCAAGTCGGACAGATTTGTAAACGAGACAACGGTGGGGAACGAGTTTTACAACGAA
TGTGGACAACATTTATTAAATCGCGACTGAACTGCTCGTACAACGGTTTTTATCTCAATG
AGCTGCGTGACATCACAAAGCCCACCATGGCCAATGGCCAAGCGGTCATCTACGCTACCT
TTGTGACGCCTGAAAACTCTCTTCCTGGATCAGCGGTTTGCAGTTACACTCTGGATTCGA
TTCGTGAGGCTCTGCAAGGTCCGTTTCTGGCCCAAACTTCGTCAACTCCCGCTCCTTCGA
AATCCCACCATCCTGGTTTGTGTCCGGATGAGAAACCATCTGATGCTGAACTTCTCTTCA
TTAAATCCTCTCCTCAAATGGCAAACCAGGCAAAAGGTTTATTGTTGATGACTCATCAGG
GAGCGCGCTACACAACATCTGTAGTTGATTCCTCACCAAGTGATAAAGATTTAAAGGTGT
TTTACATCGGAGACGAAGAAGGAAAACTCATAAGACGACTGGCGCCATCCAGTAACTGGA
AGAGCGGTGCTGTACTTAGTGTACAAGATGTTTTTGACGAAAATAGATGTTTATCTGCTA
TGCCAAGCAAAGAGGATAAAAAAGTCATAAAAATTCTGTTGGATTCGACATCTGATTACG
TCACGGTTGCGTTTAAACATTGCACAGTGAGCGTTCCTCTTCACTCCTGTCATTTGCATC
AATGCAAAAGCACGTGTATTGGTTCTGGTGACCCTTACTGTGGTTGGAATGGAACTTCCT
GCGTCGCTTTCCAAGAAACTCTTCCGCCATTAAACCAAGACCTCAGATCAGCAATCAATT
CTCCCCAGCTGTTCCCGGGCTGCGCAATCCTTACGTCGAAAAGCGAAACCTCTACACAAT
CGTTGAAAGATATAGAAAAAGAAATCGTGTTTCCCGACGAAACACTTTTACCTGAGCAAC
AAATCGATGATAAGGACAAAGTCGGCCCAGAAGAACTAGGCGACCCAGATTTGGAAGTCG
CCTCGTTTGGTGGCAACGTCCTAGCAATAGCTGTGATTCTCACTTTCATGTTAACCGTAG
TCATTATAATGGCCACCTATTTCTTCTGTCGTTGTTGGAGAGGGAAGAAAAAGTACGACT
TTCACCAGAAGCAGATGATGCAACATCAGCAGAATCTTGACGAGCTTGAGAAGCGTGGAT
CCCTCACCCGCAAGGCACAGTTGACTTACAATGGTTGTCTCGAGTGGTTGTGTGGTCCTC
CGAAGCCAACGCCAGCTCCAACGCCAATGATCAACAACAAGAGCGACGAACATTACATTC
CCCGTGCAAAGCCAAACAACTATAGTGAGGCACCGACCTTGCAACTTCATGTCGAAAAGG
CCAAGAAGCAAAGAAGGTCCTCATCCCGGTTGAACAGCACCAGTAGTGTAAATTCAAACA
ACAGTTGTATAGTGCCGAAGGTGATGCGCCAAGAGAGTGTTGTATCTATGGGAAGAAGGC
CTTCATCTCTCCAGCCTCTTCTGATCAACCAAACCTACGAACCAGTTCATATTACAAACT
ACGATGGTACAATCCAAAGACAGTTTTCTGAGGCTTCAACTCTTCCTGCCCAGAACAAAC
GATCCTCACATGCTTCATCATCCGGAAGTGGAGGTTCTCCCATATCTAACGAAAGTCACT
TGGGGGCAGCAGAGACTGGTGTCCTTCCAACCGCTTCCGCCAAAATGAGACGACGCAATG
AACGGGCTCAGAACCAAACCAATGAGATCATGCGCGAGTCCGACACAGCTATTATGGATT
TTCAAAATGCACTTGGTCGCATGGAAATCATGGGCATAACCAACCACCATCAACCAGTAA
ACATTGCCAGACAACGACTGGATTCTAATGATAGCGGAAAAGGAGAAAGTCCAAGAAACT
CACTGCGTACCGATTTAGAACAGTCTGTTGCGTCAATTACTTCACGTCATCCGCGTCCGA
ACTCGTTAAACCTTCAACGATCTACGTCATGCCGACGTCAGCGCTTGCTGTCTGAGCCTT
CGCATTCTCCGGAAGCTATTTCCGCCTTTGCACCACCAATTCAACGTTTCCACTCCGTTC
AGCCACAACCACAGATGACACCAAATGGGCGCCACAGTCGATCCCAACCCACCACACCAG
TTGGAGGCCCTTCCTCCCACAAGTTGGTTATTTTCCAACCAGCTCAGGAACAATCTGTCT
ACGCGACATTGCCCAAACATGATGTGCCCGTCACTGGCCGCAGGAAGCAACGAATGAGTG
GCGACAATCACCAGCAGATGTACATACAGCAGCGGCCGGTTTCAACTGATGTTTCAAACC
AAAGGCGCTCTTCGACAGCTTCAAGGCCAAACACGTCTCCGGCTAAGGTGCCACCGAACC
GCTACCCGAGTTTGCAAGTGCGAGGACCGTATGCGACCAAACCCTCTGTGGCGCCAGTGG
TGATACAACAGCCTGCAAGTAGGAATTCACCACCGAAGAACCACTATCCTTCTCTGCCGC
ATAGGAGCTCATCTGCACCGTTTGGAAACAACAACACTTTTGAGCGACCTTCCACCTTGC
ATAGAAGAGAGAAAATGCCTTCCTTTTTAAGGCAATCTTCGATGCCTGGCGGTGCACCAA
CGAAACCTACATTTTATCCACCCCCTATAGTGCCCACTAGCGGCGTAGAAGCATTGTAAG
ACTTGTCACAAAGGGGAGGCTATAAGCAATGATTTTAGCTATCGGCTGCTGGCAGCTTAT
AGCGTCGTGTTTTTTGCGTGCTCATTTGCGTTAATTACGTTTTTCCACTTGTGATTTGCT
GCTGTTTTCGTGTGACGAAACTTTTTCGCTTACGGCGGCGATTGGTTGATGTCAAAATAA
TATTTTTTTTCCACTGTGCCTGCATTGCTAGCAATATAGTTTAAATAAAAACATTATTCA
AACAACTGTTTTAGTTTTAAAGAGAGGAA
| ProSiteProfiles |
Semap_dom (IPR001627) - T[1-259] 39.441 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-260] 8.4E-52 |
| SMART |
Semap_dom (IPR001627) - T[1-232] 6.2E-5 |
| SUPERFAMILY |
Semap_dom_sf (IPR036352) - T[3-265] 2.35E-45 |
| Pfam |
Semap_dom (IPR001627) - T[3-223] 6.2E-40 |
| PANTHER |
Semaphorin (IPR027231) - T[5-805] 2.3E-59 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SEM6A_HUMAN | 29.897 % | 184 | 9.95E-48 |
| SEM6D_HUMAN | 33.442 % | 162 | 1.32E-40 |
| SEM6C_HUMAN | 31.661 % | 157 | 3.58E-39 |