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  1. Transcript 'KH2012:KH.L22.20.v1....'
  2. Transcript 'Phmamm.CG.MTP2014.S5...'
  3. Transcript 'Phmamm.CG.MTP2014.S1...'
  4. Transcript 'KH2012:KH.C9.264.v1....'
  5. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S161.g04474.01.t

Possible name(s)

SEMA6A; SEMA6C; SEMA6D

Location

S161 [33,825 / 48,155]

Sequences

Amino acid sequence

Length: 924

>Phmamm.CG.MTP2014.S161.g04474.01.p
MAEDEDRVFIFFNEIQILPGGERRTVAQVGQICKRDNGGERVLQRMWTTFIKSRLNCSYN
GFYLNELRDITKPTMANGQAVIYATFVTPENSLPGSAVCSYTLDSIREALQGPFLAQTSS
TPAPSKSHHPGLCPDEKPSDAELLFIKSSPQMANQAKGLLLMTHQGARYTTSVVDSSPSD
KDLKVFYIGDEEGKLIRRLAPSSNWKSGAVLSVQDVFDENRCLSAMPSKEDKKVIKILLD
STSDYVTVAFKHCTVSVPLHSCHLHQCKSTCIGSGDPYCGWNGTSCVAFQETLPPLNQDL
RSAINSPQLFPGCAILTSKSETSTQSLKDIEKEIVFPDETLLPEQQIDDKDKVGPEELGD
PDLEVASFGGNVLAIAVILTFMLTVVIIMATYFFCRCWRGKKKYDFHQKQMMQHQQNLDE
LEKRGSLTRKAQLTYNGCLEWLCGPPKPTPAPTPMINNKSDEHYIPRAKPNNYSEAPTLQ
LHVEKAKKQRRSSSRLNSTSSVNSNNSCIVPKVMRQESVVSMGRRPSSLQPLLINQTYEP
VHITNYDGTIQRQFSEASTLPAQNKRSSHASSSGSGGSPISNESHLGAAETGVLPTASAK
MRRRNERAQNQTNEIMRESDTAIMDFQNALGRMEIMGITNHHQPVNIARQRLDSNDSGKG
ESPRNSLRTDLEQSVASITSRHPRPNSLNLQRSTSCRRQRLLSEPSHSPEAISAFAPPIQ
RFHSVQPQPQMTPNGRHSRSQPTTPVGGPSSHKLVIFQPAQEQSVYATLPKHDVPVTGRR
KQRMSGDNHQQMYIQQRPVSTDVSNQRRSSTASRPNTSPAKVPPNRYPSLQVRGPYATKP
SVAPVVIQQPASRNSPPKNHYPSLPHRSSSAPFGNNNTFERPSTLHRREKMPSFLRQSSM
PGGAPTKPTFYPPPIVPTSGVEAL

Nucleotide sequence

Length: 3,989

>Phmamm.CG.MTP2014.S161.g04474.01.t
ATTTCTTGTTGACATCTAATCCTTGCCGTAACTTGATTAAGTGCTGTCTGTGTGTTTGAT
TTCCTTTGCGACGGATTTATTTTACATGGCGAAGAAACTTCACTAGACCGACAAGCAAAA
GATACAGCTTCTAAATATGGGACGCATTCTCATCATGATACTGCTTATGGCAAAATACGT
CATCCTGACTTCATCATCGTTTCCCGATAATATCCTGCCACTCAGAGAATCAAGCTTGAA
AGACATTTCAAGCAAAGCCTTTTCTGGTGACGATGCTTCCAGCGGACATCGTCTTCGTCA
CATACAGTTGATCAAGAGAATGAAAGTTTTGGGAGAAACAAAGATTGTAATTTGTGCAAG
AGAGGATATTTTCATCATAAACCCTGAGCAATTTTCGTCATCCAATCCGAATGACATCAC
TTATGATTCGGTTGTAACTTGGAAGTCCGAATTGCAAACCCGTGACCTGTGCATAATGAA
AGGCCAACCTGACGAACTCTGTTACAATTACAACAGCGTGTTCGAGGCATTGGACGAGGA
AGGAAACGAGTTTCTGGTTTGTGGAACTGACTCATATAATCCAAACTGCACAAAATATCA
GGCGATTAAATCCAGCGATGGTCGTGTGGAACTGATTAACTTTGGTTCGGGTTATTTTTC
TGGGAAGCAGAGGTGCCCGTTTGGCCCAAACCAGCCCAGCGCAAGTCTTTTTACAGGAGA
GTCTTTGTATTCTGGAACCTTTCAAGCCTTTTCTGGTGGCTCTCCAGTTATCTCCCGCAC
AATGGGAGATATGCCTCCTCTCCGCACCCCCGACGCCGCGGAGACAATCAATGGTAAATA
ATTTATGATGTCATAAACGATTAATGATCTCATAAACGTGTCTGCGACATGGACGAGTCT
ATTAACTGTCACTTTTATGTCAAACAGAACCAAGTTTTGTGGGAATGGCCGAAGATGAAG
ACCGTGTTTTTATCTTTTTTAACGAAATCCAAATACTCCCTGGCGGTGAACGCCGTACAG
TGGCCCAAGTCGGACAGATTTGTAAACGAGACAACGGTGGGGAACGAGTTTTACAACGAA
TGTGGACAACATTTATTAAATCGCGACTGAACTGCTCGTACAACGGTTTTTATCTCAATG
AGCTGCGTGACATCACAAAGCCCACCATGGCCAATGGCCAAGCGGTCATCTACGCTACCT
TTGTGACGCCTGAAAACTCTCTTCCTGGATCAGCGGTTTGCAGTTACACTCTGGATTCGA
TTCGTGAGGCTCTGCAAGGTCCGTTTCTGGCCCAAACTTCGTCAACTCCCGCTCCTTCGA
AATCCCACCATCCTGGTTTGTGTCCGGATGAGAAACCATCTGATGCTGAACTTCTCTTCA
TTAAATCCTCTCCTCAAATGGCAAACCAGGCAAAAGGTTTATTGTTGATGACTCATCAGG
GAGCGCGCTACACAACATCTGTAGTTGATTCCTCACCAAGTGATAAAGATTTAAAGGTGT
TTTACATCGGAGACGAAGAAGGAAAACTCATAAGACGACTGGCGCCATCCAGTAACTGGA
AGAGCGGTGCTGTACTTAGTGTACAAGATGTTTTTGACGAAAATAGATGTTTATCTGCTA
TGCCAAGCAAAGAGGATAAAAAAGTCATAAAAATTCTGTTGGATTCGACATCTGATTACG
TCACGGTTGCGTTTAAACATTGCACAGTGAGCGTTCCTCTTCACTCCTGTCATTTGCATC
AATGCAAAAGCACGTGTATTGGTTCTGGTGACCCTTACTGTGGTTGGAATGGAACTTCCT
GCGTCGCTTTCCAAGAAACTCTTCCGCCATTAAACCAAGACCTCAGATCAGCAATCAATT
CTCCCCAGCTGTTCCCGGGCTGCGCAATCCTTACGTCGAAAAGCGAAACCTCTACACAAT
CGTTGAAAGATATAGAAAAAGAAATCGTGTTTCCCGACGAAACACTTTTACCTGAGCAAC
AAATCGATGATAAGGACAAAGTCGGCCCAGAAGAACTAGGCGACCCAGATTTGGAAGTCG
CCTCGTTTGGTGGCAACGTCCTAGCAATAGCTGTGATTCTCACTTTCATGTTAACCGTAG
TCATTATAATGGCCACCTATTTCTTCTGTCGTTGTTGGAGAGGGAAGAAAAAGTACGACT
TTCACCAGAAGCAGATGATGCAACATCAGCAGAATCTTGACGAGCTTGAGAAGCGTGGAT
CCCTCACCCGCAAGGCACAGTTGACTTACAATGGTTGTCTCGAGTGGTTGTGTGGTCCTC
CGAAGCCAACGCCAGCTCCAACGCCAATGATCAACAACAAGAGCGACGAACATTACATTC
CCCGTGCAAAGCCAAACAACTATAGTGAGGCACCGACCTTGCAACTTCATGTCGAAAAGG
CCAAGAAGCAAAGAAGGTCCTCATCCCGGTTGAACAGCACCAGTAGTGTAAATTCAAACA
ACAGTTGTATAGTGCCGAAGGTGATGCGCCAAGAGAGTGTTGTATCTATGGGAAGAAGGC
CTTCATCTCTCCAGCCTCTTCTGATCAACCAAACCTACGAACCAGTTCATATTACAAACT
ACGATGGTACAATCCAAAGACAGTTTTCTGAGGCTTCAACTCTTCCTGCCCAGAACAAAC
GATCCTCACATGCTTCATCATCCGGAAGTGGAGGTTCTCCCATATCTAACGAAAGTCACT
TGGGGGCAGCAGAGACTGGTGTCCTTCCAACCGCTTCCGCCAAAATGAGACGACGCAATG
AACGGGCTCAGAACCAAACCAATGAGATCATGCGCGAGTCCGACACAGCTATTATGGATT
TTCAAAATGCACTTGGTCGCATGGAAATCATGGGCATAACCAACCACCATCAACCAGTAA
ACATTGCCAGACAACGACTGGATTCTAATGATAGCGGAAAAGGAGAAAGTCCAAGAAACT
CACTGCGTACCGATTTAGAACAGTCTGTTGCGTCAATTACTTCACGTCATCCGCGTCCGA
ACTCGTTAAACCTTCAACGATCTACGTCATGCCGACGTCAGCGCTTGCTGTCTGAGCCTT
CGCATTCTCCGGAAGCTATTTCCGCCTTTGCACCACCAATTCAACGTTTCCACTCCGTTC
AGCCACAACCACAGATGACACCAAATGGGCGCCACAGTCGATCCCAACCCACCACACCAG
TTGGAGGCCCTTCCTCCCACAAGTTGGTTATTTTCCAACCAGCTCAGGAACAATCTGTCT
ACGCGACATTGCCCAAACATGATGTGCCCGTCACTGGCCGCAGGAAGCAACGAATGAGTG
GCGACAATCACCAGCAGATGTACATACAGCAGCGGCCGGTTTCAACTGATGTTTCAAACC
AAAGGCGCTCTTCGACAGCTTCAAGGCCAAACACGTCTCCGGCTAAGGTGCCACCGAACC
GCTACCCGAGTTTGCAAGTGCGAGGACCGTATGCGACCAAACCCTCTGTGGCGCCAGTGG
TGATACAACAGCCTGCAAGTAGGAATTCACCACCGAAGAACCACTATCCTTCTCTGCCGC
ATAGGAGCTCATCTGCACCGTTTGGAAACAACAACACTTTTGAGCGACCTTCCACCTTGC
ATAGAAGAGAGAAAATGCCTTCCTTTTTAAGGCAATCTTCGATGCCTGGCGGTGCACCAA
CGAAACCTACATTTTATCCACCCCCTATAGTGCCCACTAGCGGCGTAGAAGCATTGTAAG
ACTTGTCACAAAGGGGAGGCTATAAGCAATGATTTTAGCTATCGGCTGCTGGCAGCTTAT
AGCGTCGTGTTTTTTGCGTGCTCATTTGCGTTAATTACGTTTTTCCACTTGTGATTTGCT
GCTGTTTTCGTGTGACGAAACTTTTTCGCTTACGGCGGCGATTGGTTGATGTCAAAATAA
TATTTTTTTTCCACTGTGCCTGCATTGCTAGCAATATAGTTTAAATAAAAACATTATTCA
AACAACTGTTTTAGTTTTAAAGAGAGGAA

InterProScan

ProSiteProfiles
Semap_dom (IPR001627) - T[1-259] 39.441
Gene3D
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-260] 8.4E-52
SMART
Semap_dom (IPR001627) - T[1-232] 6.2E-5
SUPERFAMILY
Semap_dom_sf (IPR036352) - T[3-265] 2.35E-45
Pfam
Semap_dom (IPR001627) - T[3-223] 6.2E-40
PANTHER
Semaphorin (IPR027231) - T[5-805] 2.3E-59

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SEM6A_HUMAN 29.897 % 184 9.95E-48
SEM6D_HUMAN 33.442 % 162 1.32E-40
SEM6C_HUMAN 31.661 % 157 3.58E-39





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