- Clone 'cien224595' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S161.g04474.02.t
Possible name(s)
SEMA6A; SEMA6C; SEMA6D
Gene model
Location
S161 [40,514 / 47,885]
Amino acid sequence
Length: 1,087
>Phmamm.CG.MTP2014.S161.g04474.02.p
EDIFIINPEQFSSSNPNDITYDSVVTWKSELQTRDLCIMKGQPDELCYNYNSVFEALDEE
GNEFLVCGTDSYNPNCTKYQAIKSSDGRVELINFGSGYFSGKQRCPFGPNQPSASLFTGE
SLYSGTFQAFSGGSPVISRTMGDMPPLRTPDAAETINEPSFVGMAEDEDRVFIFFNEIQI
LPGGERRTVAQVGQICKRDNGGERVLQRMWTTFIKSRLNCSYNGFYLNELRDITKPTMAN
GQAVIYATFVTPENSLPGSAVCSYTLDSIREALQGPFLAQTSSTPAPSKSHHPGLCPDEK
PSDAELLFIKSSPQMANQAKGLLLMTHQGARYTTSVVDSSPSDKDLKVFYIGDEEGKLIR
RLAPSSNWKSGAVLSVQDVFDENRCLSAMPSKEDKKVIKILLDSTSDYVTVAFKHCTVSV
PLHSCHLHQCKSTCIGSGDPYCGWNGTSCVAFQETLPPLNQDLRSAINSPQLFPGCAILT
SKSETSTQSLKDIEKEIVFPDETLLPEQQIDDKDKVGPEELGDPDLEVASFGGNVLAIAV
ILTFMLTVVIIMATYFFCRCWRGKKKYDFHQKQMMQHQQNLDELEKRGSLTRKAQLTYNG
CLEWLCGPPKPTPAPTPMINNKSDEHYIPRAKPNNYSEAPTLQLHVEKAKKQRRSSSRLN
STSSVNSNNSCIVPKVMRQESVVSMGRRPSSLQPLLINQTYEPVHITNYDGTIQRQFSEA
STLPAQNKRSSHASSSGSGGSPISNESHLGAAETGVLPTASAKMRRRNERAQNQTNEIMR
ESDTAIMDFQNALGRMEIMGITNHHQPVNIARQRLDSNDSGKGESPRNSLRTDLEQSVAS
ITSRHPRPNSLNLQRSTSCRRQRLLSEPSHSPEAISAFAPPIQRFHSVQPQPQMTPNGRH
SRSQPTTPVGGPSSHKLVIFQPAQEQSVYATLPKHDVPVTGRRKQRMSGDNHQQMYIQQR
PVSTDVSNQRRSSTASRPNTSPAKVPPNRYPSLQVRGPYATKPSVAPVVIQQPASRNSPP
KNHYPSLPHRSSSAPFGNNNTFERPSTLHRREKMPSFLRQSSMPGGAPTKPTFYPPPIVP
TSGVEAL
Nucleotide sequence
Length: 3,264
>Phmamm.CG.MTP2014.S161.g04474.02.t
GAGGATATTTTCATCATAAACCCTGAGCAATTTTCGTCATCCAATCCGAATGACATCACT
TATGATTCGGTTGTAACTTGGAAGTCCGAATTGCAAACCCGTGACCTGTGCATAATGAAA
GGCCAACCTGACGAACTCTGTTACAATTACAACAGCGTGTTCGAGGCATTGGACGAGGAA
GGAAACGAGTTTCTGGTTTGTGGAACTGACTCATATAATCCAAACTGCACAAAATATCAG
GCGATTAAATCCAGCGATGGTCGTGTGGAACTGATTAACTTTGGTTCGGGTTATTTTTCT
GGGAAGCAGAGGTGCCCGTTTGGCCCAAACCAGCCCAGCGCAAGTCTTTTTACAGGAGAG
TCTTTGTATTCTGGAACCTTTCAAGCCTTTTCTGGTGGCTCTCCAGTTATCTCCCGCACA
ATGGGAGATATGCCTCCTCTCCGCACCCCCGACGCCGCGGAGACAATCAATGAACCAAGT
TTTGTGGGAATGGCCGAAGATGAAGACCGTGTTTTTATCTTTTTTAACGAAATCCAAATA
CTCCCTGGCGGTGAACGCCGTACAGTGGCCCAAGTCGGACAGATTTGTAAACGAGACAAC
GGTGGGGAACGAGTTTTACAACGAATGTGGACAACATTTATTAAATCGCGACTGAACTGC
TCGTACAACGGTTTTTATCTCAATGAGCTGCGTGACATCACAAAGCCCACCATGGCCAAT
GGCCAAGCGGTCATCTACGCTACCTTTGTGACGCCTGAAAACTCTCTTCCTGGATCAGCG
GTTTGCAGTTACACTCTGGATTCGATTCGTGAGGCTCTGCAAGGTCCGTTTCTGGCCCAA
ACTTCGTCAACTCCCGCTCCTTCGAAATCCCACCATCCTGGTTTGTGTCCGGATGAGAAA
CCATCTGATGCTGAACTTCTCTTCATTAAATCCTCTCCTCAAATGGCAAACCAGGCAAAA
GGTTTATTGTTGATGACTCATCAGGGAGCGCGCTACACAACATCTGTAGTTGATTCCTCA
CCAAGTGATAAAGATTTAAAGGTGTTTTACATCGGAGACGAAGAAGGAAAACTCATAAGA
CGACTGGCGCCATCCAGTAACTGGAAGAGCGGTGCTGTACTTAGTGTACAAGATGTTTTT
GACGAAAATAGATGTTTATCTGCTATGCCAAGCAAAGAGGATAAAAAAGTCATAAAAATT
CTGTTGGATTCGACATCTGATTACGTCACGGTTGCGTTTAAACATTGCACAGTGAGCGTT
CCTCTTCACTCCTGTCATTTGCATCAATGCAAAAGCACGTGTATTGGTTCTGGTGACCCT
TACTGTGGTTGGAATGGAACTTCCTGCGTCGCTTTCCAAGAAACTCTTCCGCCATTAAAC
CAAGACCTCAGATCAGCAATCAATTCTCCCCAGCTGTTCCCGGGCTGCGCAATCCTTACG
TCGAAAAGCGAAACCTCTACACAATCGTTGAAAGATATAGAAAAAGAAATCGTGTTTCCC
GACGAAACACTTTTACCTGAGCAACAAATCGATGATAAGGACAAAGTCGGCCCAGAAGAA
CTAGGCGACCCAGATTTGGAAGTCGCCTCGTTTGGTGGCAACGTCCTAGCAATAGCTGTG
ATTCTCACTTTCATGTTAACCGTAGTCATTATAATGGCCACCTATTTCTTCTGTCGTTGT
TGGAGAGGGAAGAAAAAGTACGACTTTCACCAGAAGCAGATGATGCAACATCAGCAGAAT
CTTGACGAGCTTGAGAAGCGTGGATCCCTCACCCGCAAGGCACAGTTGACTTACAATGGT
TGTCTCGAGTGGTTGTGTGGTCCTCCGAAGCCAACGCCAGCTCCAACGCCAATGATCAAC
AACAAGAGCGACGAACATTACATTCCCCGTGCAAAGCCAAACAACTATAGTGAGGCACCG
ACCTTGCAACTTCATGTCGAAAAGGCCAAGAAGCAAAGAAGGTCCTCATCCCGGTTGAAC
AGCACCAGTAGTGTAAATTCAAACAACAGTTGTATAGTGCCGAAGGTGATGCGCCAAGAG
AGTGTTGTATCTATGGGAAGAAGGCCTTCATCTCTCCAGCCTCTTCTGATCAACCAAACC
TACGAACCAGTTCATATTACAAACTACGATGGTACAATCCAAAGACAGTTTTCTGAGGCT
TCAACTCTTCCTGCCCAGAACAAACGATCCTCACATGCTTCATCATCCGGAAGTGGAGGT
TCTCCCATATCTAACGAAAGTCACTTGGGGGCAGCAGAGACTGGTGTCCTTCCAACCGCT
TCCGCCAAAATGAGACGACGCAATGAACGGGCTCAGAACCAAACCAATGAGATCATGCGC
GAGTCCGACACAGCTATTATGGATTTTCAAAATGCACTTGGTCGCATGGAAATCATGGGC
ATAACCAACCACCATCAACCAGTAAACATTGCCAGACAACGACTGGATTCTAATGATAGC
GGAAAAGGAGAAAGTCCAAGAAACTCACTGCGTACCGATTTAGAACAGTCTGTTGCGTCA
ATTACTTCACGTCATCCGCGTCCGAACTCGTTAAACCTTCAACGATCTACGTCATGCCGA
CGTCAGCGCTTGCTGTCTGAGCCTTCGCATTCTCCGGAAGCTATTTCCGCCTTTGCACCA
CCAATTCAACGTTTCCACTCCGTTCAGCCACAACCACAGATGACACCAAATGGGCGCCAC
AGTCGATCCCAACCCACCACACCAGTTGGAGGCCCTTCCTCCCACAAGTTGGTTATTTTC
CAACCAGCTCAGGAACAATCTGTCTACGCGACATTGCCCAAACATGATGTGCCCGTCACT
GGCCGCAGGAAGCAACGAATGAGTGGCGACAATCACCAGCAGATGTACATACAGCAGCGG
CCGGTTTCAACTGATGTTTCAAACCAAAGGCGCTCTTCGACAGCTTCAAGGCCAAACACG
TCTCCGGCTAAGGTGCCACCGAACCGCTACCCGAGTTTGCAAGTGCGAGGACCGTATGCG
ACCAAACCCTCTGTGGCGCCAGTGGTGATACAACAGCCTGCAAGTAGGAATTCACCACCG
AAGAACCACTATCCTTCTCTGCCGCATAGGAGCTCATCTGCACCGTTTGGAAACAACAAC
ACTTTTGAGCGACCTTCCACCTTGCATAGAAGAGAGAAAATGCCTTCCTTTTTAAGGCAA
TCTTCGATGCCTGGCGGTGCACCAACGAAACCTACATTTTATCCACCCCCTATAGTGCCC
ACTAGCGGCGTAGAAGCATTGTAA
| ProSiteProfiles |
Semap_dom (IPR001627) - T[1-422] 61.246 |
| SMART |
Semap_dom (IPR001627) - T[2-395] 2.1E-57 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[3-423] 8.7E-92 |
| PANTHER |
Semaphorin (IPR027231) - T[9-967] 6.9E-100 |
| SUPERFAMILY |
Semap_dom_sf (IPR036352) - T[15-428] 5.62E-78 |
| Pfam |
Semap_dom (IPR001627) - T[22-386] 4.7E-72 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SEM6A_HUMAN | 30.364 % | 262 | 7.16E-73 |
| SEM6D_HUMAN | 32.985 % | 248 | 4.46E-68 |
| SEM6C_HUMAN | 32.104 % | 226 | 2.2E-61 |